Files in USCbiostats/HiLDA
Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation
.Rbuildignore
.gitignore
DESCRIPTION
INSTALL
NAMESPACE
NEWS
R/RcppExports.R
R/class.R
R/hilda_diagnosis.R
R/hilda_plot.R
R/hilda_test.R
R/pm_getSignature.R
R/pm_plot.R
R/read_file.R
R/vis_signature.R
README.md
inst/CITATION
inst/JAGSModel
inst/extdata/esophageal.mp.txt.gz
inst/extdata/hildaLocal.rdata
inst/extdata/sample.rdata
inst/global.txt
inst/global_tr.txt
inst/local.txt
inst/local_tr.txt
inst/script/INFORMATION
inst/script/use_esophageal.R
inst/script/use_hildaLocal.R
inst/script/use_sampledata.R
man/EstimatedParameters-class.Rd
man/MetaInformation-class.Rd
man/MutationFeatureData-class.Rd
man/PMSboundary.Rd
man/boundaryTurbo_F.Rd
man/boundaryTurbo_Q.Rd
man/calcPMSLikelihood.Rd
man/convertFromTurbo_F.Rd
man/convertFromTurbo_Q.Rd
man/convertToTurbo_F.Rd
man/convertToTurbo_Q.Rd
man/getLogLikelihoodC.Rd
man/getMutationFeatureVector.Rd
man/hildaBarplot.Rd
man/hildaDiffPlot.Rd
man/hildaGlobalResult.Rd
man/hildaLocalResult.Rd
man/hildaPlotSignature.Rd
man/hildaReadMPFile.Rd
man/hildaRhat.Rd
man/hildaTest.Rd
man/mySquareEM.Rd
man/pmBarplot.Rd
man/pmMultiBarplot.Rd
man/pmPlotSignature.Rd
man/pmgetSignature.Rd
man/updateMstepFQC.Rd
man/updatePMSParam.Rd
man/updateTheta_NormalizedC.Rd
man/visPMS.Rd
src/.gitignore
src/EMalgorithm.cpp
src/RcppExports.cpp
src/checkBoundary.cpp
src/convertFromToVector.cpp
tests/testthat.R
tests/testthat/test_hilda.R
vignettes/HiLDA.R
vignettes/HiLDA.Rmd
