tcplMakeAeidPlts: Create a .pdf with dose-response plots

In USEPA/CompTox-ToxCast-tcpl: ToxCast Data Analysis Pipeline

Create a .pdf with dose-response plots

Description

tcplMakeAeidPlts creates a .pdf file with the dose-response plots for the given aeid.

Usage

tcplMakeAeidPlts(
  aeid,
  compare = F,
  lvl = 4L,
  fname = NULL,
  odir = getwd(),
  ordr.fitc = TRUE,
  clib = NULL,
  cnst = NULL
)

Arguments

aeid	Integer of length 1 or 2, the assay endpoint id
compare	Boolean to for comparison of aeids if length(aeid)>1
lvl	Integer of length 1, the data level to use (4-7). Only level 5-6 valid for compare aeids.
fname	Character, the filename
odir	The directory to save the .pdf file in
ordr.fitc	Logical, should the fits be ordered by fit category?
clib	Character, the chemical library to subset on, see
cnst	Constant hline to draw on plot tcplLoadClib for more information.

Details

tcplMakeAeidPlts provides a wrapper for tcplPlotFits, allowing the user to produce PDFs with the curve plots without having to separately load all of the data and establish the PDF device.

If 'fname' is NULL, a default name is given by concatenating together assay information.

Note, the default value for ordr.fitc is TRUE in tcplMakeAeidPlts, but FALSE in tcplPlotFits

Note, only level 5 or level 6 is valid for comparing 2 aeids.

Examples

## Not run: 
## Will produce the same result as the example for tcplPlotFits
tcplMakeAeidPlts(aeid = 1, lvl = 6, ordr.fitc = FALSE)

## End(Not run)

## Not run: 
## Compare two aeids on same plots
tcplMakeAeidPlts(aeid = c(1,2), compare=T, lvl = 6)

## End(Not run)

USEPA/CompTox-ToxCast-tcpl documentation built on April 17, 2024, 6:32 a.m.