tcplMultiplot: Plot summary fits based on fit and dose-response data

In USEPA/CompTox-ToxCast-tcpl: ToxCast Data Analysis Pipeline

Plot summary fits based on fit and dose-response data

Description

tcplMultiplot takes the dose-response and fit data and produces summary plot figures.

Usage

tcplMultiplot(dat, agg, flg = NULL, boot = NULL, browse = FALSE, hitc.all)

Arguments

dat	data.table, level 4 or level 5 data, see details.
agg	data.table, concentration-response aggregate data, see details.
flg	data.table, level 6 data, see details.
boot	data.table, level 7 data, see details.
browse	Logical, should browser() be called after every plot?
hitc.all	Logical, if FALSE, only plots with hitc==1 will be displayed

Details

The data for 'dat', 'agg', and 'flg' should be loaded using the tcplLoadData function with the appropriate 'lvl' parameter. See help page for tcplLoadData for more information.

If dat contains only one aeid, plots will be ordered by chemical name (chnm). Otherwise, plots are ordered by assay endpoint name (aenm). ## While it is most likely the user will want to just save all of the plots ## to view in a PDF, the 'browse' parameter can be used to quickly view ## some plots.

USEPA/CompTox-ToxCast-tcpl documentation built on April 22, 2024, 12:37 p.m.