Files in USEPA/LUMA

LCMS-Based Untargeted Metabolomics Assistant

R/Combine_Peaklists-Modules.R R/Constructor-Modules.R R/Data_Culling-Modules.R R/Format_Output-Modules.R R/In_House_Library-Modules.R R/Munge_Data-Modules.R R/Normalize_Peaklists-Modules.R R/Peaklist_Pos.R R/calculation-functions.R R/database-functions.R R/dialog-functions.R R/formatting-functions.R R/general-data-utilities.R R/ion-mode-functions.R R/mSetObj.R R/normalization-functions.R R/parser-functions.R R/plotting-functions.R R/query-functions.R R/trimming-functions.R R/wrapper-functions.R R/zzz.R README.md cran-comments.md data-raw/Peaklist_Pos.R data-raw/mSetObj.R man/AnnotatePeaklist.Rd man/CAMERAFiles_dlg.Rd man/CombineFeatures.Rd man/CombinePeaklists.Rd man/CullBackground.Rd man/CullCV.Rd man/CullMF.Rd man/CullVoidVolume.Rd man/FinalWorkflow.Rd man/FormatForMetaboAnalystR.Rd man/FormatForSIMCA.Rd man/InitWorkflow.Rd man/InputFiles_dlg.Rd man/LUMA-package.Rd man/NormalizePeaklists.Rd man/ParseCAMERA.Rd man/Peaklist_Pos.Rd man/ScriptInfo_dlg.Rd man/SimplyPeaklists.Rd man/calc_corrstat.Rd man/calc_cv.Rd man/calc_minfrac.Rd man/combine_ion_modes.Rd man/combine_phenodata.Rd man/connect_libdb.Rd man/connect_lumadb.Rd man/connect_peakdb.Rd man/find_Background.Rd man/format_MetabolomicData.Rd man/format_simca.Rd man/gen_filebase.Rd man/get_features.Rd man/mSetObj.Rd man/match_Annotation.Rd man/normalize_unit.Rd man/output_MetaData.Rd man/parse_neg_results.Rd man/parse_pos_results.Rd man/plot_ionduplicate.Rd man/plot_metgroup.Rd man/pre_combine_ion_modes.Rd man/read_tbl.Rd man/remove_background_peaks.Rd man/remove_ion_dup.Rd man/remove_void_volume.Rd man/replace_zeros_normalize.Rd man/search_IonDup.Rd man/sum_features.Rd man/trim_cv.Rd man/trim_minfrac.Rd man/trim_rt.Rd man/wrap_camera.Rd man/wrap_xcms.Rd man/write_tbl.Rd man/write_xlsx.Rd tests/testthat.R tests/testthat/test-calculation-functions.R tests/testthat/test-database-functions.R tests/testthat/test-formatting-functions.R tests/testthat/test-ion-mode-functions.R tests/testthat/test-normalization-functions.R tests/testthat/test-parser-functions.R tests/testthat/test-plotting-functions.R tests/testthat/test-query-functions.R tests/testthat/test-trimming-functions.R tests/testthat/test-utilities.R tests/testthat/test-wrapper-functions.R vignettes/SOP_EPA_Internal_Testing.R vignettes/SOP_EPA_Internal_Testing.Rmd vignettes/SOP_EPA_Internal_Testing.pdf vignettes/luma.R vignettes/luma.Rmd