tests/testthat/tests_userFriendly_fxns.R
In USGS-R/dataRetrieval: Retrieval Functions for USGS and EPA Hydrology and Water Quality Data
context("Unit values")
test_that("Unit value data returns correct types", {
testthat::skip_on_cran()
siteNumber <- "05114000"
parameterCd <- "00060"
startDate <- "2014-10-10"
endDate <- "2014-10-10"
rawData <- readNWISuv(siteNumber, parameterCd, startDate, endDate)
rawData <- renameNWISColumns(rawData)
spreadOver120 <- readNWISuv(
siteNumber, parameterCd,
as.Date(Sys.Date() - 200),
Sys.Date()
)
expect_true(min(spreadOver120$dateTime) < as.POSIXct(Sys.Date(), tz = "UTC"))
recent_uv <- readNWISuv(
siteNumber, parameterCd,
as.Date(Sys.Date() - 10),
Sys.Date()
)
expect_equal(grep(
x = attr(recent_uv, "url"),
pattern = "https://waterservices.usgs.gov/nwis/iv/"
), 1)
expect_equal(grep(
x = attr(spreadOver120, "url"),
pattern = "https://nwis.waterservices.usgs.gov/nwis/iv/"
), 1)
# nolint start: line_length_linter
expect_equal(
attr(rawData, "url"),
"https://nwis.waterservices.usgs.gov/nwis/iv/?site=05114000&format=waterml,1.1&ParameterCd=00060&startDT=2014-10-10&endDT=2014-10-10"
)
# nolint end
timeZoneChange <- readNWISuv(c("04024430", "04024000"), parameterCd,
"2013-11-03", "2013-11-03",
tz = "America/Chicago"
)
timeZoneChange <- renameNWISColumns(timeZoneChange)
expect_is(rawData$dateTime, "POSIXct")
expect_is(rawData$Flow_Inst, "numeric")
# nolint start: line_length_linter
expect_equal(attr(rawData, "url"), "https://nwis.waterservices.usgs.gov/nwis/iv/?site=05114000&format=waterml,1.1&ParameterCd=00060&startDT=2014-10-10&endDT=2014-10-10")
# nolint end
site <- "04087170"
pCode <- "63680"
startDate <- "2012-07-10"
endDate <- "2012-07-17"
dd_2 <- readNWISuv(site, pCode, startDate, endDate)
expect_true(any(names(dd_2) %in% c(
"agency_cd", "site_no",
"dateTime",
"X_63680_00000", "X_63680_00000_cd",
"X_.YSI.6136.UP._63680_00000",
"X_.YSI.6136.UP._63680_00000_cd",
"tz_cd"
)))
})
context("Peak, rating, meas, site")
test_that("peak, rating curves, surface-water measurements", {
testthat::skip_on_cran()
siteNumbers <- c("01594440", "040851325")
data <- readNWISpeak(siteNumbers)
expect_is(data$agency_cd, "character")
# Rating curvs:
siteNumber <- "01594440"
data <- readNWISrating(siteNumber, "base")
expect_that(length(attr(data, "RATING")), equals(7))
# Surface meas:
siteNumbers <- c("01594440", "040851325")
data <- readNWISmeas(siteNumbers)
expect_is(data$agency_cd, "character")
siteINFO <- readNWISsite("05114000")
expect_is(siteINFO$agency_cd, "character")
expect_equal(siteINFO$site_no, "05114000")
siteINFOMulti <- readNWISsite(c("05114000", "09423350"))
expect_true(nrow(siteINFOMulti) == 2)
Meas07227500.ex <- readNWISmeas("07227500", expanded = TRUE)
expect_is(Meas07227500.ex$measurement_dt, "Date")
expect_is(Meas07227500.ex$measurement_dateTime, "POSIXct")
expect_equal(nrow(whatNWISdata(siteNumber = "10312000", parameterCd = "50286")), 0)
expect_equal(ncol(whatNWISdata(siteNumber = "10312000", parameterCd = "50286")), 24)
url <- "https://waterservices.usgs.gov/nwis/site/?format=rdb&seriesCatalogOutput=true&sites=05114000"
x <- importRDB1(url)
siteID <- "263819081585801"
gwl_1 <- readNWISgwl(siteID)
expect_equal(unique(gwl_1$site_no), siteID)
})
test_that("NWIS dv tests", {
testthat::skip_on_cran()
siteNumber <- "04085427"
startDate <- "2012-01-01"
endDate <- "2012-06-30"
pCode <- "00060"
rawDailyQ <- readNWISdv(siteNumber, pCode, startDate, endDate)
expect_is(rawDailyQ$Date, "Date")
rawDailyQAndTempMeanMax <- readNWISdv(siteNumber, c("00010", "00060"),
startDate, endDate,
statCd = c("00001", "00003")
)
expect_true(length(grep("00060", names(rawDailyQAndTempMeanMax))) >= 2 &
length(grep("00010", names(rawDailyQAndTempMeanMax))) >= 2)
rawDailyMultiSites <- readNWISdv(c("01491000", "01645000"),
c("00010", "00060"),
startDate, endDate,
statCd = c("00001", "00003")
)
expect_true(length(unique(rawDailyMultiSites$site_no)) > 1)
site <- "05212700"
notActive <- readNWISdv(site, "00060", "2014-01-01", "2014-01-07")
expect_true(nrow(notActive) == 0)
})
test_that("WQP qw tests", {
testthat::skip_on_cran()
nameToUse <- "Specific conductance"
pcodeToUse <- "00095"
INFO_WQP <- readWQPqw("USGS-04024315", pcodeToUse,
startDate = "", endDate = "", legacy = FALSE)
expect_is(INFO_WQP$Activity_StartDateTime, "POSIXct")
INFO2 <- readWQPqw("WIDNR_WQX-10032762", nameToUse,
startDate = "", endDate = "", legacy = FALSE)
expect_is(INFO2$Activity_StartDateTime, "POSIXct")
df <- readWQPqw("USGS-04193500", parameterCd = "00665", legacy = FALSE)
expect_true(nrow(df) > 0)
df2 <- readWQPqw("USGS-05427718", parameterCd = "all")
expect_true(nrow(df2) > 0)
#Empty legacy:
df3 <- readWQPqw(siteNumbers = "USGS-385032115220501",
parameterCd = "all", legacy = TRUE)
expect_true(nrow(df3) == 0)
})
context("readNWISstat tests")
test_that("readNWISstat tests", {
testthat::skip_on_cran()
data <- readNWISstat(
siteNumbers = c("02171500"),
parameterCd = c("00010", "00060"),
statReportType = "daily",
statType = c("mean", "p75", "p25"),
startDate = "2000",
endDate = "2010"
)
expect_is(data$begin_yr, "numeric")
expect_true(length(data) > 3)
monthData <- readNWISstat(
siteNumbers = c("02171500"),
parameterCd = c("00010", "00060"),
statReportType = "monthly",
startDate = "2000",
endDate = "2010"
)
expect_is(monthData$mean_va, "numeric")
annualData <- readNWISstat(
siteNumbers = c("02171500"),
parameterCd = c("00010", "00060"),
statReportType = "annual",
startDate = "2000",
endDate = "2010"
)
expect_gt(nrow(annualData), 2)
})
context("readNWISuse tests")
test_that("readNWISuse tests", {
testthat::skip_on_cran()
dc <- readNWISuse(
years = c(2000, 2005, 2010),
stateCd = "DC", countyCd = NULL
)
expect_true(nrow(dc) == 3)
expect_is(dc$state_cd, "character")
ohio <- readNWISuse(
years = 2005,
stateCd = "OH",
countyCd = "ALL"
)
expect_true(nrow(ohio) == 88)
twoCounties <- readNWISuse(
years = 2010,
stateCd = "PA",
countyCd = c("Cambria", "Indiana")
)
expect_true(nrow(twoCounties) == 2)
})
context("state tests")
test_that("state county tests", {
testthat::skip_on_cran()
fullName <- stateCdLookup("wi", "fullName")
expect_equal(fullName, "Wisconsin")
abbriev <- stateCdLookup("Wisconsin", "postal")
expect_equal(abbriev, "WI")
id <- stateCdLookup("WI", "id")
expect_equal(id, 55)
name <- stateCdLookup(55, "fullName")
expect_equal(name, "Wisconsin")
multipleStates <- stateCdLookup(c("West Virginia", "Wisconsin", 55, "MN"))
expect_equal(multipleStates, c("WV", "WI", "WI", "MN"))
id <- countyCdLookup(state = "WI", county = "Dane")
expect_equal(id, "025")
name <- countyCdLookup(state = "OH", county = 13, output = "fullName")
expect_equal(name, "Belmont County")
index <- countyCdLookup(state = "Pennsylvania", county = "ALLEGHENY COUNTY", output = "tableIndex")
expect_equal(index, 2258)
fromIDs <- countyCdLookup(state = 13, county = 5, output = "fullName")
expect_equal(fromIDs, "Bacon County")
counties <- c("51001", "51003")
already_ready <- countyCdLookup(county = counties)
expect_equal(counties, already_ready)
})
context("water year column")
df_test <- data.frame(
site_no = as.character(1:13),
dateTime = seq(as.Date("2010-01-01"),
as.Date("2011-01-31"),
by = "months"
),
result_va = 1:13, stringsAsFactors = FALSE
)
test_that("addWaterYear works with Date, POSIXct, character, but breaks with numeric", {
testthat::skip_on_cran()
df_date <- df_test
df_date_wy <- addWaterYear(df_date)
expect_equal(ncol(df_date_wy), ncol(df_date) + 1)
df_posixct <- df_test
df_posixct$dateTime <- as.POSIXct(df_posixct$dateTime)
df_posixct_wy <- addWaterYear(df_posixct)
expect_equal(ncol(df_posixct_wy), ncol(df_posixct) + 1)
df_char <- df_test
df_char$dateTime <- as.character(df_char$dateTime)
df_char_wy <- addWaterYear(df_char)
expect_equal(ncol(df_char_wy), ncol(df_char) + 1)
df_num <- df_test
df_num$dateTime <- as.numeric(df_num$dateTime)
dfnum2 <- addWaterYear(df_num)
expect_equal(dfnum2$waterYear, rep(NA, 13))
})
test_that("addWaterYear works for each column name", {
testthat::skip_on_cran()
nwisqw_style <- df_test
nwisqw_style_wy <- addWaterYear(nwisqw_style)
expect_equal(ncol(nwisqw_style_wy), ncol(nwisqw_style) + 1)
nwisdata_style <- df_test
names(nwisdata_style)[2] <- "Date"
nwisdata_style_wy <- addWaterYear(nwisdata_style)
expect_equal(ncol(nwisdata_style_wy), ncol(nwisdata_style) + 1)
wqp_style <- df_test
names(wqp_style)[2] <- "ActivityStartDate"
wqp_style[["ActivityEndDate"]] <- wqp_style[["ActivityStartDate"]]
wqp_style_wy <- addWaterYear(wqp_style)
expect_equal(ncol(wqp_style_wy), ncol(wqp_style) + 2)
userspecified_style <- df_test
names(userspecified_style)[2] <- "MyDateCol"
expect_error(
addWaterYear(userspecified_style),
"specified date column does not exist in supplied data frame"
)
})
test_that("addWaterYear correctly calculates the WY and is numeric", {
testthat::skip_on_cran()
df_test_wy <- addWaterYear(df_test)
expect_is(df_test_wy[["waterYear"]], "numeric")
expect_true(all(df_test_wy[["waterYear"]][1:9] == 2010))
expect_true(all(df_test_wy[["waterYear"]][10:13] == 2011))
})
test_that("addWaterYear adds column next to dateTime", {
testthat::skip_on_cran()
df_test_wy <- addWaterYear(df_test)
dateTime_col <- which(names(df_test_wy) == "dateTime")
expect_equal(names(df_test_wy)[dateTime_col + 1], "waterYear")
})
test_that("addWaterYear can be used with pipes", {
testthat::skip_on_cran()
df_test_wy <- df_test
df_test_wy <- addWaterYear(df_test_wy)
expect_equal(ncol(df_test_wy), ncol(df_test) + 1)
})
test_that("addWaterYear doesn't add another WY column if it exists", {
testthat::skip_on_cran()
df_test_wy <- addWaterYear(df_test)
expect_equal(ncol(df_test_wy), ncol(df_test) + 1)
df_test_wy2 <- addWaterYear(df_test_wy)
expect_equal(ncol(df_test_wy2), ncol(df_test_wy))
})
test_that("calcWaterYear can handle missing values", {
dateVec <- seq(as.Date("2010-01-01"), as.Date("2011-01-31"), by = "months")
dateVec[c(3, 7, 12)] <- NA
wyVec <- dataRetrieval:::calcWaterYear(dateVec)
expect_is(wyVec, "numeric")
expect_true(all(is.na(wyVec[c(3, 7, 12)])))
})
context("Construct NWIS urls")
test_that("Construct NWIS urls", {
testthat::skip_on_cran()
siteNumber <- "01594440"
startDate <- "1985-01-01"
endDate <- ""
pCode <- c("00060", "00010")
url_daily <- constructNWISURL(siteNumber, pCode,
startDate, endDate, "dv",
statCd = c("00003", "00001")
)
# nolint start: line_length_linter
expect_equal(url_daily, "https://waterservices.usgs.gov/nwis/dv/?site=01594440&format=waterml,1.1&ParameterCd=00060,00010&StatCd=00003,00001&startDT=1985-01-01")
url_unit <- constructNWISURL(siteNumber, pCode, "2012-06-28", "2012-06-30", "iv")
expect_equal(
url_unit,
"https://nwis.waterservices.usgs.gov/nwis/iv/?site=01594440&format=waterml,1.1&ParameterCd=00060,00010&startDT=2012-06-28&endDT=2012-06-30"
)
url_daily_tsv <- constructNWISURL(siteNumber, pCode, startDate, endDate, "dv",
statCd = c("00003", "00001"), format = "tsv"
)
expect_equal(url_daily_tsv, "https://waterservices.usgs.gov/nwis/dv/?site=01594440&format=rdb,1.0&ParameterCd=00060,00010&StatCd=00003,00001&startDT=1985-01-01")
url_use <- constructUseURL(
years = c(1990, 1995),
stateCd = "Ohio",
countyCd = c(1, 3),
categories = "ALL"
)
expect_equal(url_use, "https://waterdata.usgs.gov/OH/nwis/water_use?format=rdb&rdb_compression=value&wu_area=county&wu_county=1%2C3&wu_year=1990%2C1995&wu_category=ALL")
# nolint end
})
context("Construct WQP urls")
test_that("Construct WQP urls", {
testthat::skip_on_cran()
site_id <- "01594440"
startDate <- "1985-01-01"
endDate <- ""
pCode <- c("00060", "00010")
url_wqp <- constructWQPURL(
paste("USGS", site_id, sep = "-"),
c("01075", "00029", "00453"),
startDate, endDate, legacy = FALSE)
# nolint start: line_length_linter
expect_equal(
url_wqp,
"https://www.waterqualitydata.us/wqx3/Result/search?siteid=USGS-01594440&pCode=01075&pCode=00029&pCode=00453&startDateLo=01-01-1985&mimeType=csv&dataProfile=basicPhysChem"
)
# Multiple characteristicNames
charNames <- c(
"Temperature", "Temperature, sample", "Temperature, water",
"Temperature, water, deg F"
)
obs_url_orig <- constructWQPURL(
siteNumbers = c("IIDFG-41WSSPAHS", "USGS-02352560"),
parameterCd = charNames,
startDate = "", endDate = "", legacy = FALSE)
expect_equal(
obs_url_orig,
"https://www.waterqualitydata.us/wqx3/Result/search?siteid=IIDFG-41WSSPAHS&siteid=USGS-02352560&characteristicName=Temperature&characteristicName=Temperature%2C%20sample&characteristicName=Temperature%2C%20water&characteristicName=Temperature%2C%20water%2C%20deg%20F&mimeType=csv&dataProfile=basicPhysChem"
)
# nolint end
})
context("Construct WQP urls")
test_that("Construct WQP urls", {
siteNumber <- "01594440"
startDate <- "1985-01-01"
endDate <- ""
pCode <- c("00060", "00010")
url_wqp <- constructWQPURL(
paste("USGS", siteNumber, sep = "-"),
c("01075", "00029", "00453"),
startDate, endDate,legacy = FALSE)
# nolint start: line_length_linter
expect_equal(
url_wqp,
"https://www.waterqualitydata.us/wqx3/Result/search?siteid=USGS-01594440&pCode=01075&pCode=00029&pCode=00453&startDateLo=01-01-1985&mimeType=csv&dataProfile=basicPhysChem"
)
# nolint end
})
context("pCode Stuff")
test_that("pCode Stuff", {
testthat::skip_on_cran()
paramINFO <- readNWISpCode(c("00060", "01075", "00931", NA))
expect_equal(nrow(paramINFO), 4)
expect_equal(paramINFO$parameter_cd, c("00060", "01075", "00931", NA))
# pcode 12345 isn't a valid code:
expect_warning(paramINFO <- readNWISpCode(c("12345")))
expect_warning(paramINFO <- readNWISpCode(c("00060", "01075",
"12345", NA_character_)))
expect_equal(nrow(paramINFO), 4)
expect_equal(paramINFO$parameter_cd, c("00060", "01075",
"12345", NA_character_))
expect_equal(paramINFO$parameter_group_nm[3:4], c(NA_character_, NA_character_))
paramINFO <- readNWISpCode("all")
expect_true(nrow(paramINFO) > 20000)
expect_equal(
attr(paramINFO, "url"),
"https://help.waterdata.usgs.gov/code/parameter_cd_query?fmt=rdb&group_cd=%"
)
})
context("pCode Name Stuff")
test_that("pCode Stuff", {
testthat::skip_on_cran()
paramINFO <- pcode_to_name(c("00060", "01075", "00931", NA))
expect_equal(nrow(paramINFO), 4)
expect_equal(paramINFO$parm_cd, c("00060", "01075", "00931", NA))
# pcode 12345 isn't a valid code:
expect_warning(paramINFO <- pcode_to_name(c("12345")))
expect_warning(paramINFO <- pcode_to_name(c("00060", "01075",
"12345", NA_character_)))
expect_equal(nrow(paramINFO), 4)
expect_equal(paramINFO$parm_cd, c("00060", "01075",
"12345", NA_character_))
expect_equal(paramINFO$description[3:4], c(NA_character_, NA_character_))
paramINFO <- pcode_to_name("all")
expect_true(nrow(paramINFO) > 19000)
expect_equal(
attr(paramINFO, "url"),
"https://www.waterqualitydata.us/Codes/public_srsnames/?mimeType=json"
)
})
USGS-R/dataRetrieval documentation built on Nov. 5, 2024, 9:18 p.m.
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context("Unit values")
test_that("Unit value data returns correct types", {
testthat::skip_on_cran()
siteNumber <- "05114000"
parameterCd <- "00060"
startDate <- "2014-10-10"
endDate <- "2014-10-10"
rawData <- readNWISuv(siteNumber, parameterCd, startDate, endDate)
rawData <- renameNWISColumns(rawData)
spreadOver120 <- readNWISuv(
siteNumber, parameterCd,
as.Date(Sys.Date() - 200),
Sys.Date()
)
expect_true(min(spreadOver120$dateTime) < as.POSIXct(Sys.Date(), tz = "UTC"))
recent_uv <- readNWISuv(
siteNumber, parameterCd,
as.Date(Sys.Date() - 10),
Sys.Date()
)
expect_equal(grep(
x = attr(recent_uv, "url"),
pattern = "https://waterservices.usgs.gov/nwis/iv/"
), 1)
expect_equal(grep(
x = attr(spreadOver120, "url"),
pattern = "https://nwis.waterservices.usgs.gov/nwis/iv/"
), 1)
# nolint start: line_length_linter
expect_equal(
attr(rawData, "url"),
"https://nwis.waterservices.usgs.gov/nwis/iv/?site=05114000&format=waterml,1.1&ParameterCd=00060&startDT=2014-10-10&endDT=2014-10-10"
)
# nolint end
timeZoneChange <- readNWISuv(c("04024430", "04024000"), parameterCd,
"2013-11-03", "2013-11-03",
tz = "America/Chicago"
)
timeZoneChange <- renameNWISColumns(timeZoneChange)
expect_is(rawData$dateTime, "POSIXct")
expect_is(rawData$Flow_Inst, "numeric")
# nolint start: line_length_linter
expect_equal(attr(rawData, "url"), "https://nwis.waterservices.usgs.gov/nwis/iv/?site=05114000&format=waterml,1.1&ParameterCd=00060&startDT=2014-10-10&endDT=2014-10-10")
# nolint end
site <- "04087170"
pCode <- "63680"
startDate <- "2012-07-10"
endDate <- "2012-07-17"
dd_2 <- readNWISuv(site, pCode, startDate, endDate)
expect_true(any(names(dd_2) %in% c(
"agency_cd", "site_no",
"dateTime",
"X_63680_00000", "X_63680_00000_cd",
"X_.YSI.6136.UP._63680_00000",
"X_.YSI.6136.UP._63680_00000_cd",
"tz_cd"
)))
})
context("Peak, rating, meas, site")
test_that("peak, rating curves, surface-water measurements", {
testthat::skip_on_cran()
siteNumbers <- c("01594440", "040851325")
data <- readNWISpeak(siteNumbers)
expect_is(data$agency_cd, "character")
# Rating curvs:
siteNumber <- "01594440"
data <- readNWISrating(siteNumber, "base")
expect_that(length(attr(data, "RATING")), equals(7))
# Surface meas:
siteNumbers <- c("01594440", "040851325")
data <- readNWISmeas(siteNumbers)
expect_is(data$agency_cd, "character")
siteINFO <- readNWISsite("05114000")
expect_is(siteINFO$agency_cd, "character")
expect_equal(siteINFO$site_no, "05114000")
siteINFOMulti <- readNWISsite(c("05114000", "09423350"))
expect_true(nrow(siteINFOMulti) == 2)
Meas07227500.ex <- readNWISmeas("07227500", expanded = TRUE)
expect_is(Meas07227500.ex$measurement_dt, "Date")
expect_is(Meas07227500.ex$measurement_dateTime, "POSIXct")
expect_equal(nrow(whatNWISdata(siteNumber = "10312000", parameterCd = "50286")), 0)
expect_equal(ncol(whatNWISdata(siteNumber = "10312000", parameterCd = "50286")), 24)
url <- "https://waterservices.usgs.gov/nwis/site/?format=rdb&seriesCatalogOutput=true&sites=05114000"
x <- importRDB1(url)
siteID <- "263819081585801"
gwl_1 <- readNWISgwl(siteID)
expect_equal(unique(gwl_1$site_no), siteID)
})
test_that("NWIS dv tests", {
testthat::skip_on_cran()
siteNumber <- "04085427"
startDate <- "2012-01-01"
endDate <- "2012-06-30"
pCode <- "00060"
rawDailyQ <- readNWISdv(siteNumber, pCode, startDate, endDate)
expect_is(rawDailyQ$Date, "Date")
rawDailyQAndTempMeanMax <- readNWISdv(siteNumber, c("00010", "00060"),
startDate, endDate,
statCd = c("00001", "00003")
)
expect_true(length(grep("00060", names(rawDailyQAndTempMeanMax))) >= 2 &
length(grep("00010", names(rawDailyQAndTempMeanMax))) >= 2)
rawDailyMultiSites <- readNWISdv(c("01491000", "01645000"),
c("00010", "00060"),
startDate, endDate,
statCd = c("00001", "00003")
)
expect_true(length(unique(rawDailyMultiSites$site_no)) > 1)
site <- "05212700"
notActive <- readNWISdv(site, "00060", "2014-01-01", "2014-01-07")
expect_true(nrow(notActive) == 0)
})
test_that("WQP qw tests", {
testthat::skip_on_cran()
nameToUse <- "Specific conductance"
pcodeToUse <- "00095"
INFO_WQP <- readWQPqw("USGS-04024315", pcodeToUse,
startDate = "", endDate = "", legacy = FALSE)
expect_is(INFO_WQP$Activity_StartDateTime, "POSIXct")
INFO2 <- readWQPqw("WIDNR_WQX-10032762", nameToUse,
startDate = "", endDate = "", legacy = FALSE)
expect_is(INFO2$Activity_StartDateTime, "POSIXct")
df <- readWQPqw("USGS-04193500", parameterCd = "00665", legacy = FALSE)
expect_true(nrow(df) > 0)
df2 <- readWQPqw("USGS-05427718", parameterCd = "all")
expect_true(nrow(df2) > 0)
#Empty legacy:
df3 <- readWQPqw(siteNumbers = "USGS-385032115220501",
parameterCd = "all", legacy = TRUE)
expect_true(nrow(df3) == 0)
})
context("readNWISstat tests")
test_that("readNWISstat tests", {
testthat::skip_on_cran()
data <- readNWISstat(
siteNumbers = c("02171500"),
parameterCd = c("00010", "00060"),
statReportType = "daily",
statType = c("mean", "p75", "p25"),
startDate = "2000",
endDate = "2010"
)
expect_is(data$begin_yr, "numeric")
expect_true(length(data) > 3)
monthData <- readNWISstat(
siteNumbers = c("02171500"),
parameterCd = c("00010", "00060"),
statReportType = "monthly",
startDate = "2000",
endDate = "2010"
)
expect_is(monthData$mean_va, "numeric")
annualData <- readNWISstat(
siteNumbers = c("02171500"),
parameterCd = c("00010", "00060"),
statReportType = "annual",
startDate = "2000",
endDate = "2010"
)
expect_gt(nrow(annualData), 2)
})
context("readNWISuse tests")
test_that("readNWISuse tests", {
testthat::skip_on_cran()
dc <- readNWISuse(
years = c(2000, 2005, 2010),
stateCd = "DC", countyCd = NULL
)
expect_true(nrow(dc) == 3)
expect_is(dc$state_cd, "character")
ohio <- readNWISuse(
years = 2005,
stateCd = "OH",
countyCd = "ALL"
)
expect_true(nrow(ohio) == 88)
twoCounties <- readNWISuse(
years = 2010,
stateCd = "PA",
countyCd = c("Cambria", "Indiana")
)
expect_true(nrow(twoCounties) == 2)
})
context("state tests")
test_that("state county tests", {
testthat::skip_on_cran()
fullName <- stateCdLookup("wi", "fullName")
expect_equal(fullName, "Wisconsin")
abbriev <- stateCdLookup("Wisconsin", "postal")
expect_equal(abbriev, "WI")
id <- stateCdLookup("WI", "id")
expect_equal(id, 55)
name <- stateCdLookup(55, "fullName")
expect_equal(name, "Wisconsin")
multipleStates <- stateCdLookup(c("West Virginia", "Wisconsin", 55, "MN"))
expect_equal(multipleStates, c("WV", "WI", "WI", "MN"))
id <- countyCdLookup(state = "WI", county = "Dane")
expect_equal(id, "025")
name <- countyCdLookup(state = "OH", county = 13, output = "fullName")
expect_equal(name, "Belmont County")
index <- countyCdLookup(state = "Pennsylvania", county = "ALLEGHENY COUNTY", output = "tableIndex")
expect_equal(index, 2258)
fromIDs <- countyCdLookup(state = 13, county = 5, output = "fullName")
expect_equal(fromIDs, "Bacon County")
counties <- c("51001", "51003")
already_ready <- countyCdLookup(county = counties)
expect_equal(counties, already_ready)
})
context("water year column")
df_test <- data.frame(
site_no = as.character(1:13),
dateTime = seq(as.Date("2010-01-01"),
as.Date("2011-01-31"),
by = "months"
),
result_va = 1:13, stringsAsFactors = FALSE
)
test_that("addWaterYear works with Date, POSIXct, character, but breaks with numeric", {
testthat::skip_on_cran()
df_date <- df_test
df_date_wy <- addWaterYear(df_date)
expect_equal(ncol(df_date_wy), ncol(df_date) + 1)
df_posixct <- df_test
df_posixct$dateTime <- as.POSIXct(df_posixct$dateTime)
df_posixct_wy <- addWaterYear(df_posixct)
expect_equal(ncol(df_posixct_wy), ncol(df_posixct) + 1)
df_char <- df_test
df_char$dateTime <- as.character(df_char$dateTime)
df_char_wy <- addWaterYear(df_char)
expect_equal(ncol(df_char_wy), ncol(df_char) + 1)
df_num <- df_test
df_num$dateTime <- as.numeric(df_num$dateTime)
dfnum2 <- addWaterYear(df_num)
expect_equal(dfnum2$waterYear, rep(NA, 13))
})
test_that("addWaterYear works for each column name", {
testthat::skip_on_cran()
nwisqw_style <- df_test
nwisqw_style_wy <- addWaterYear(nwisqw_style)
expect_equal(ncol(nwisqw_style_wy), ncol(nwisqw_style) + 1)
nwisdata_style <- df_test
names(nwisdata_style)[2] <- "Date"
nwisdata_style_wy <- addWaterYear(nwisdata_style)
expect_equal(ncol(nwisdata_style_wy), ncol(nwisdata_style) + 1)
wqp_style <- df_test
names(wqp_style)[2] <- "ActivityStartDate"
wqp_style[["ActivityEndDate"]] <- wqp_style[["ActivityStartDate"]]
wqp_style_wy <- addWaterYear(wqp_style)
expect_equal(ncol(wqp_style_wy), ncol(wqp_style) + 2)
userspecified_style <- df_test
names(userspecified_style)[2] <- "MyDateCol"
expect_error(
addWaterYear(userspecified_style),
"specified date column does not exist in supplied data frame"
)
})
test_that("addWaterYear correctly calculates the WY and is numeric", {
testthat::skip_on_cran()
df_test_wy <- addWaterYear(df_test)
expect_is(df_test_wy[["waterYear"]], "numeric")
expect_true(all(df_test_wy[["waterYear"]][1:9] == 2010))
expect_true(all(df_test_wy[["waterYear"]][10:13] == 2011))
})
test_that("addWaterYear adds column next to dateTime", {
testthat::skip_on_cran()
df_test_wy <- addWaterYear(df_test)
dateTime_col <- which(names(df_test_wy) == "dateTime")
expect_equal(names(df_test_wy)[dateTime_col + 1], "waterYear")
})
test_that("addWaterYear can be used with pipes", {
testthat::skip_on_cran()
df_test_wy <- df_test
df_test_wy <- addWaterYear(df_test_wy)
expect_equal(ncol(df_test_wy), ncol(df_test) + 1)
})
test_that("addWaterYear doesn't add another WY column if it exists", {
testthat::skip_on_cran()
df_test_wy <- addWaterYear(df_test)
expect_equal(ncol(df_test_wy), ncol(df_test) + 1)
df_test_wy2 <- addWaterYear(df_test_wy)
expect_equal(ncol(df_test_wy2), ncol(df_test_wy))
})
test_that("calcWaterYear can handle missing values", {
dateVec <- seq(as.Date("2010-01-01"), as.Date("2011-01-31"), by = "months")
dateVec[c(3, 7, 12)] <- NA
wyVec <- dataRetrieval:::calcWaterYear(dateVec)
expect_is(wyVec, "numeric")
expect_true(all(is.na(wyVec[c(3, 7, 12)])))
})
context("Construct NWIS urls")
test_that("Construct NWIS urls", {
testthat::skip_on_cran()
siteNumber <- "01594440"
startDate <- "1985-01-01"
endDate <- ""
pCode <- c("00060", "00010")
url_daily <- constructNWISURL(siteNumber, pCode,
startDate, endDate, "dv",
statCd = c("00003", "00001")
)
# nolint start: line_length_linter
expect_equal(url_daily, "https://waterservices.usgs.gov/nwis/dv/?site=01594440&format=waterml,1.1&ParameterCd=00060,00010&StatCd=00003,00001&startDT=1985-01-01")
url_unit <- constructNWISURL(siteNumber, pCode, "2012-06-28", "2012-06-30", "iv")
expect_equal(
url_unit,
"https://nwis.waterservices.usgs.gov/nwis/iv/?site=01594440&format=waterml,1.1&ParameterCd=00060,00010&startDT=2012-06-28&endDT=2012-06-30"
)
url_daily_tsv <- constructNWISURL(siteNumber, pCode, startDate, endDate, "dv",
statCd = c("00003", "00001"), format = "tsv"
)
expect_equal(url_daily_tsv, "https://waterservices.usgs.gov/nwis/dv/?site=01594440&format=rdb,1.0&ParameterCd=00060,00010&StatCd=00003,00001&startDT=1985-01-01")
url_use <- constructUseURL(
years = c(1990, 1995),
stateCd = "Ohio",
countyCd = c(1, 3),
categories = "ALL"
)
expect_equal(url_use, "https://waterdata.usgs.gov/OH/nwis/water_use?format=rdb&rdb_compression=value&wu_area=county&wu_county=1%2C3&wu_year=1990%2C1995&wu_category=ALL")
# nolint end
})
context("Construct WQP urls")
test_that("Construct WQP urls", {
testthat::skip_on_cran()
site_id <- "01594440"
startDate <- "1985-01-01"
endDate <- ""
pCode <- c("00060", "00010")
url_wqp <- constructWQPURL(
paste("USGS", site_id, sep = "-"),
c("01075", "00029", "00453"),
startDate, endDate, legacy = FALSE)
# nolint start: line_length_linter
expect_equal(
url_wqp,
"https://www.waterqualitydata.us/wqx3/Result/search?siteid=USGS-01594440&pCode=01075&pCode=00029&pCode=00453&startDateLo=01-01-1985&mimeType=csv&dataProfile=basicPhysChem"
)
# Multiple characteristicNames
charNames <- c(
"Temperature", "Temperature, sample", "Temperature, water",
"Temperature, water, deg F"
)
obs_url_orig <- constructWQPURL(
siteNumbers = c("IIDFG-41WSSPAHS", "USGS-02352560"),
parameterCd = charNames,
startDate = "", endDate = "", legacy = FALSE)
expect_equal(
obs_url_orig,
"https://www.waterqualitydata.us/wqx3/Result/search?siteid=IIDFG-41WSSPAHS&siteid=USGS-02352560&characteristicName=Temperature&characteristicName=Temperature%2C%20sample&characteristicName=Temperature%2C%20water&characteristicName=Temperature%2C%20water%2C%20deg%20F&mimeType=csv&dataProfile=basicPhysChem"
)
# nolint end
})
context("Construct WQP urls")
test_that("Construct WQP urls", {
siteNumber <- "01594440"
startDate <- "1985-01-01"
endDate <- ""
pCode <- c("00060", "00010")
url_wqp <- constructWQPURL(
paste("USGS", siteNumber, sep = "-"),
c("01075", "00029", "00453"),
startDate, endDate,legacy = FALSE)
# nolint start: line_length_linter
expect_equal(
url_wqp,
"https://www.waterqualitydata.us/wqx3/Result/search?siteid=USGS-01594440&pCode=01075&pCode=00029&pCode=00453&startDateLo=01-01-1985&mimeType=csv&dataProfile=basicPhysChem"
)
# nolint end
})
context("pCode Stuff")
test_that("pCode Stuff", {
testthat::skip_on_cran()
paramINFO <- readNWISpCode(c("00060", "01075", "00931", NA))
expect_equal(nrow(paramINFO), 4)
expect_equal(paramINFO$parameter_cd, c("00060", "01075", "00931", NA))
# pcode 12345 isn't a valid code:
expect_warning(paramINFO <- readNWISpCode(c("12345")))
expect_warning(paramINFO <- readNWISpCode(c("00060", "01075",
"12345", NA_character_)))
expect_equal(nrow(paramINFO), 4)
expect_equal(paramINFO$parameter_cd, c("00060", "01075",
"12345", NA_character_))
expect_equal(paramINFO$parameter_group_nm[3:4], c(NA_character_, NA_character_))
paramINFO <- readNWISpCode("all")
expect_true(nrow(paramINFO) > 20000)
expect_equal(
attr(paramINFO, "url"),
"https://help.waterdata.usgs.gov/code/parameter_cd_query?fmt=rdb&group_cd=%"
)
})
context("pCode Name Stuff")
test_that("pCode Stuff", {
testthat::skip_on_cran()
paramINFO <- pcode_to_name(c("00060", "01075", "00931", NA))
expect_equal(nrow(paramINFO), 4)
expect_equal(paramINFO$parm_cd, c("00060", "01075", "00931", NA))
# pcode 12345 isn't a valid code:
expect_warning(paramINFO <- pcode_to_name(c("12345")))
expect_warning(paramINFO <- pcode_to_name(c("00060", "01075",
"12345", NA_character_)))
expect_equal(nrow(paramINFO), 4)
expect_equal(paramINFO$parm_cd, c("00060", "01075",
"12345", NA_character_))
expect_equal(paramINFO$description[3:4], c(NA_character_, NA_character_))
paramINFO <- pcode_to_name("all")
expect_true(nrow(paramINFO) > 19000)
expect_equal(
attr(paramINFO, "url"),
"https://www.waterqualitydata.us/Codes/public_srsnames/?mimeType=json"
)
})
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