Man pages for USGS-R/mda.lakes
Tools for combining models, data, and processing for lakes
| area_light_temp_threshold | Calculate the average benthic area within temperature and... |
| area_light_threshold | Calculate the average benthic area within light thresholds |
| area_temp_threshold | Calculate the average benthic area within temperature... |
| calc_mod_obs_metric | Calculate limno metrics for lots of lakes |
| calc_stratified_periods | Calculate all stratified periods based on temp threshold |
| calc_toha | calculate the Thermal Optical Habitat Area (TOHA) for a given... |
| calc_toha_stats | Calc standard stats on TOHA for a given lake |
| combine_output_data | combine full sim run output data |
| comb_output_table | Combine file-based table output |
| create_irr_day_cycle | Estimate a full irradiance diurnal cycle |
| download_helper | Download helper to handle retries |
| driver_add_burnin_years | Duplicate n years of initial data |
| driver_add_rain | Add rain to specific month |
| driver_nldas_debias_airt_sw | Debias a driver dataset using NLDAS |
| driver_nldas_wind_debias | Debias NLDAS wind |
| driver_save | Save a driver data.frame to a temporary file |
| fix_ice_on_off | Fix ice on/off for no-ice |
| getArea | Get lake surface area |
| getBathy | Get Hypsometry for a given lake |
| getCanopy | Get surrounding canopy height for a given lake |
| getCD | Get coefficient of wind drag for a given lake or given wind... |
| getClarity | Get light attenuation coefficient for a given lake |
| get_driver_index | Return the driver file index table |
| get_driver_path | Return driver file location for given lake |
| get_driver_wbic | Internal function for WBIC drivers |
| getElevation | Get surface elevation for a given lake |
| getIceOff | Get the ice off date for a given lake |
| getIceOn | Get the ice on date for a given lake |
| get_ice_onoff | Get Ice On/Off Dates |
| getLatLon | Get latitude and longitude for a given lake |
| getPerim | Get perimeter for a given lake |
| getResidenceTime | Get estimated lake residence time |
| getScenarioKd | Get light attenuation based on long-term trend scenario for a... |
| getSDF | Get shoreline development factor for a given lake |
| getWstr | Get wind sheltering coefficient for a given lake |
| getZmax | Get max depth for a given lake |
| getZmean | Get mean depth for a given lake |
| interp_hypso | Linear interpolate hypsometry |
| LTER_NLDAS_gapper | fits LTER data to NLDAS, uses NLDAS to gap-fill |
| necsc_thermal_metrics_core | Calculate core NECSC thermal metrics |
| opti_thermal_habitat | Calculate optical thermal habitat using temp and light... |
| populate_base_lake_nml | Create basic NML file object for a lake |
| prep_run_glm_kd | Prepare and run model with Kd scenario |
| run_necsc_lake | Large wrapper function NECSC mod run |
| sb_archive_model | Upload and archive model to ScienceBase |
| sens_seasonal_site | Seasonal, cross-site Sen's slope |
| set_driver_url | Set driver URL |
| summarize_notaro | Summary stats for Notaro |
