Files in USGS-R/mda.lakes
Tools for combining models, data, and processing for lakes

.Gitignore

.Rbuildignore

CITATION

DESCRIPTION

Documentation/output_list.xlsx

GLM/Run/summary_hs.ASTER.txt

GLM/Run/summary_hs.ASTER_pos.txt

GLM/Run/summary_hs.GLiHT.txt

GLM/Run/summary_hs.Hondzo.txt

GLM/Run/summary_hs.SRTM.txt

GLM/Run/summary_hs.Simard.txt

GLM/WBIC_985100/WBIC_985100.csv

GLM/WBIC_985100/cal.in.tsv

GLM/WBIC_985100/cal.out.tsv

GLM/WBIC_985100/glm.nml

GLM/WBIC_985100/icecal.in.tsv

GLM/WBIC_985100/lake.csv

GLM/sim/Sparkling/glm.bat

GLM/sim/Sparkling/glm.nml

GLM/sim/Sparkling/plots.nml

Issues/overall_trends_by_wbic.csv

Issues/success_sim_count_by_wbic.csv

NAMESPACE

Output/KdScenarios/decreasing.metrics.out.tsv

Output/KdScenarios/increasing.metrics.out.tsv

Output/KdScenarios/stable.metrics.out.tsv

Output/airtemp.metrics.csv

Output/driver.JAS.means.tsv

Output/omg.huge.output.tsv

R/AAA.R R/GLM.physics.R R/GLM_physics_continuous_rewriteR.R R/calc_mod_obs_metric.R R/calc_stratified_periods.R R/calc_toha.R R/calc_toha_stats.R R/comb_output_table.R R/combine_output_data.R R/create_irr_day_cycle.R R/download_helpers.R R/driver_modification_functions.R R/drop.datetime.R R/fit_NLDAS_LTER.R R/fix_ice_on_off.R R/get_annual_temp_peaks.R R/get_driver_nhd.R R/get_driver_path.R R/get_ice_onoff.R R/hansen_habitat_calc.R R/lake_attribute_functions.R R/necsc_thermal_metrics_core.R R/opti_thermal_habitat.R R/populate_base_lake_nml.R R/prep_run_glm_kd.R R/qsat.R R/run_necsc_lake.R R/sb_archive_model.R R/sens_seasonal.R R/summarize_var_notaro.R R/volume_light_threshold.R README.md

appveyor.yml

data-raw/PRISM/met_prism_parse.R

data-raw/PRISM/prism_tmn.tsv

data-raw/PRISM/prism_tmx.tsv

data-raw/WiDNR/do_parse.R

data-raw/WiDNR/temp_DO.csv

demo/FIGURE_strat_duration.R demo/cluster_cont_calibrate_bias.R demo/cluster_cont_calibrate_month_secchi.R demo/cluster_cont_hab_out.R demo/cluster_cont_wtr_out.R demo/cluster_downscaled_future_wtr_out.R demo/cluster_hypo_bias_parameter_sweep.R demo/common_running_functions.R demo/debias_drivers.R demo/document_calibration_overview_template.Rmd demo/future_trends/FIGURE_depth_doy_grid.R demo/future_trends/FIGURE_met_sens_trend.R demo/mpi_hab_out.R demo/mpi_hab_out_nldas.R demo/mpi_output_data.R demo/pub_code/R.Figures/air.temp.trend.calc.R

demo/pub_code/R.Figures/all.slopes.csv

demo/pub_code/R.Figures/all.slopes.density.csv

demo/pub_code/R.Figures/all.slopes.model.csv

demo/pub_code/R.Figures/all.slopes.n.csv

demo/pub_code/R.Figures/calc.met.driver.trends.R demo/pub_code/R.Figures/calc.table.1.R demo/pub_code/R.Figures/check_lm_on_LTER.R

demo/pub_code/R.Figures/density.figure.4.tiff

demo/pub_code/R.Figures/diamond2.tif

demo/pub_code/R.Figures/downsamp.figure.2.tiff

demo/pub_code/R.Figures/downsamp.figure.3.tiff

demo/pub_code/R.Figures/downsamp.figure.4.tiff

demo/pub_code/R.Figures/downsampled.slopes.density.csv

demo/pub_code/R.Figures/grl.figure.1.1.tiff

demo/pub_code/R.Figures/grl.figure.1.2.tiff

demo/pub_code/R.Figures/grl.figure.1.tiff

demo/pub_code/R.Figures/grl.figure.2.tiff

demo/pub_code/R.Figures/grl.figure.3.tiff

demo/pub_code/R.Figures/grl.figure.4.tiff

demo/pub_code/R.Figures/grl.figure.5.tiff

demo/pub_code/R.Figures/grl.figure.indv.lake.R

demo/pub_code/R.Figures/grl.figure.supp.tiff

demo/pub_code/R.Figures/lake.sampling.metrics.csv

demo/pub_code/R.Figures/luke.legend.R

demo/pub_code/R.Figures/median.slopes.tsv

demo/pub_code/R.Figures/model.figure.2.tiff

demo/pub_code/R.Figures/model.figure.3.tiff

demo/pub_code/R.Figures/model.figure.4.tiff

demo/pub_code/R.Figures/new.figure.3.2.mean.tiff

demo/pub_code/R.Figures/new.figure.3.2.tiff

demo/pub_code/R.Figures/new.figure.3.tiff

demo/pub_code/R.Figures/new.figure.4.2.tiff

demo/pub_code/R.Figures/new.figure.4.3.tiff

demo/pub_code/R.Figures/new.figure.4.tiff

demo/pub_code/R.Figures/output.advanced.empirical.temp.trends.R demo/pub_code/R.Figures/scratch.R demo/pub_code/R.Figures/sens.confint.mod.R demo/pub_code/R.Figures/sens.slope.population.R demo/pub_code/R.Figures/trends.analysis.R demo/pub_code/R.Figures/wow.depth.large.pdf demo/pub_code/R.Figures/wow.depth.small.pdf demo/pub_code/R.Figures/wow.surf.pdf demo/pub_code/plot.AGU.R demo/pub_code/plot.JAMS.coherence.R demo/pub_code/plot.calval.R demo/pub_code/plot.evap.R demo/pub_code/plot.expected.results.NECSC.R demo/pub_code/plot.fig2.GCB.R demo/pub_code/plot.fig4.GCB.R demo/pub_code/plot.fig6.GCB.R demo/pub_code/plot.fig7.GCB.R demo/pub_code/plot.fig8.GCB.R demo/pub_code/plot.fig9.GCB.R demo/pub_code/plot.hc.fig.R demo/pub_code/plot.sensitivity.R demo/pub_code/plot.strat.onset.R demo/pub_code/plotHondzoVsMarkfort.R demo/pub_code/table2.GCB.R demo/pub_code/table3.GCB.R demo/run_wilma_lake_hab_out.R demo/run_wilma_lake_wtr_out.R demo/slurm_array_cleanup_missing_lakes.R demo/slurm_array_hab_out_god_mode.R demo/validate_glm_ice_model.R

inst/CompressCode/bzip2.dll

inst/CompressCode/netcdfBins.zip

inst/CompressCode/unzip.exe

inst/CompressCode/zip.exe

inst/CompressCode/zip32z64.dll

inst/OnClusterCode/.Renviron

inst/OnClusterCode/calc.evap.R inst/OnClusterCode/calc.strat.days.R inst/OnClusterCode/calc.strat.onset.R

inst/OnClusterCode/chainedModelHabCalc.bat

inst/OnClusterCode/chainedModelNcCompress.bat

inst/OnClusterCode/chainedModelStratCalc.bat

inst/OnClusterCode/chainedModelWtrOut.bat

inst/OnClusterCode/chainedScenarioHabCalc.bat

inst/OnClusterCode/chainedmodel.bat

inst/OnClusterCode/habitat.calc.condor.Kevin.R inst/OnClusterCode/habitat.calc.condor.R

inst/OnClusterCode/habitatcalc.bat

inst/OnClusterCode/ncdf4_1.12.zip

inst/OnClusterCode/ncdf4_1.4.zip

inst/OnClusterCode/rGLM_0.1.5.tar.gz

inst/OnClusterCode/rGLM_0.1.5.zip

inst/OnClusterCode/rLakeAnalyzer_1.2.zip

inst/OnClusterCode/rLakeAnalyzer_1.3.3.tar.gz

inst/OnClusterCode/rscript_wrap.bat

inst/OnClusterCode/run.calc.strat.condor.R inst/OnClusterCode/run.single.condor.R inst/OnClusterCode/run.single.scenario.condor.R

inst/OnClusterCode/stringr_0.6.2.zip

inst/OnClusterCode/wtr.out.condor.R

inst/extdata/LTER_met_gapped.csv

inst/extdata/NTL_LTER_met.csv

inst/extdata/NTL_NLDAS-2_met.csv

inst/oldcode/MATLAB/areaMultipart.m

inst/oldcode/MATLAB/calcCalValStats.m

inst/oldcode/MATLAB/compressAllRaw.m

inst/oldcode/MATLAB/convertToHypsos.m

inst/oldcode/MATLAB/extractAndConvertLakeDonuts.m

inst/oldcode/MATLAB/extractAndConvertWiscoHydrolayer.m

inst/oldcode/MATLAB/fixAndCombinePolygon.m

inst/oldcode/MATLAB/getArea.m

inst/oldcode/MATLAB/getBathy.m

inst/oldcode/MATLAB/getCanopy.m

inst/oldcode/MATLAB/getClarity.m

inst/oldcode/MATLAB/getDriverDataGDP.m

inst/oldcode/MATLAB/getDriverNLDAS.m

inst/oldcode/MATLAB/getElev.m

inst/oldcode/MATLAB/getLakeIDs.m

inst/oldcode/MATLAB/getLatLon.m

inst/oldcode/MATLAB/getSurroundingLandCover.m

inst/oldcode/MATLAB/getWstr.m

inst/oldcode/MATLAB/getZmax.m

inst/oldcode/MATLAB/getZmean.m

inst/oldcode/MATLAB/plotHistJulyGLM.m

inst/oldcode/MATLAB/plotValStats.m

inst/oldcode/MATLAB/qsat.m

inst/oldcode/MATLAB/refreshWiLMAfiles.m

inst/oldcode/MATLAB/sun_position.m

inst/oldcode/MATLAB/wFileOpen.m

inst/oldcode/MATLAB/wcsFileOpen.m

inst/oldcode/MATLAB/writeGLMdriver.m

inst/oldcode/MATLAB/writeGLMdriver2MAT.m

inst/oldcode/MATLAB/writeGLMdriverNLDASdaily.m

inst/oldcode/MATLAB/writeGLMnmlParamFile.m

inst/oldcode/MATLAB/writeMissingData.m

inst/oldcode/MATLAB/writeNMLs4GLM.m

inst/oldcode/MATLAB/zipLakeFile.m

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man/LTER_NLDAS_gapper.Rd man/area_light_temp_threshold.Rd man/area_light_threshold.Rd man/area_temp_threshold.Rd man/calc_mod_obs_metric.Rd man/calc_stratified_periods.Rd man/calc_toha.Rd man/calc_toha_stats.Rd man/comb_output_table.Rd man/combine_output_data.Rd man/create_irr_day_cycle.Rd man/download_helper.Rd man/driver_add_burnin_years.Rd man/driver_add_rain.Rd man/driver_nldas_debias_airt_sw.Rd man/driver_nldas_wind_debias.Rd man/driver_save.Rd man/fix_ice_on_off.Rd man/getArea.Rd man/getBathy.Rd man/getCD.Rd man/getCanopy.Rd man/getClarity.Rd man/getElevation.Rd man/getIceOff.Rd man/getIceOn.Rd man/getLatLon.Rd man/getPerim.Rd man/getResidenceTime.Rd man/getSDF.Rd man/getScenarioKd.Rd man/getWstr.Rd man/getZmax.Rd man/getZmean.Rd man/get_driver_index.Rd man/get_driver_path.Rd man/get_driver_wbic.Rd man/get_ice_onoff.Rd man/interp_hypso.Rd man/necsc_thermal_metrics_core.Rd man/opti_thermal_habitat.Rd man/populate_base_lake_nml.Rd man/prep_run_glm_kd.Rd man/run_necsc_lake.Rd man/sb_archive_model.Rd man/sens_seasonal_site.Rd man/set_driver_url.Rd man/summarize_notaro.Rd tools/fit_predict_ice.R

USGS-R/mda.lakes documentation built on Nov. 13, 2020, 8:28 p.m.

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USGS-R/mda.lakes
Tools for combining models, data, and processing for lakes

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Tools for combining models, data, and processing for lakes

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USGS-R/mda.lakes Tools for combining models, data, and processing for lakes

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USGS-R/mda.lakes
Tools for combining models, data, and processing for lakes

Files in USGS-R/mda.lakes
Tools for combining models, data, and processing for lakes