Files in VEuPathDB/microbiomeComputations
Compute Results for Microbiome Analyses
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/class-AbsoluteAbundanceData.R
R/class-AbundanceData.R
R/class-Comparator.R
R/class-SampleMetadata.R
R/method-alphaDiv.R
R/method-betaDiv.R
R/method-correlation.R
R/method-differentialAbundance.R
R/method-rankedAbundance.R
R/methods-AbundanceData.R
R/methods-Comparator.R
R/methods-SampleMetadata.R
R/methods-json.R
R/microbiomeComputations-package.R
R/utils.R
README.md
data/P_VALUE_FLOOR.rda
data/testOTU.rda
man/AbsoluteAbundanceData-class.Rd
man/AbundanceData-class.Rd
man/Comparator-class.Rd
man/SampleMetadata-class.Rd
man/alphaDiv.Rd
man/betaDiv.Rd
man/correlation-AbundanceData-AbundanceData-method.Rd
man/correlation-AbundanceData-missing-method.Rd
man/differentialAbundance.Rd
man/getAbundances.Rd
man/getGroupLabels.Rd
man/getIdColumns.Rd
man/getSampleMetadata.Rd
man/microbiomeComputations-package.Rd
man/pruneFeatures.Rd
man/rankedAbundance.Rd
man/removeIncompleteSamples.Rd
man/selfCorrelation-AbundanceData-method.Rd
man/selfCorrelation-SampleMetadata-method.Rd
src/Makevars.in
src/Makevars.win
src/RcppExports.cpp
src/RcppExports.o
src/mbio-utils.cpp
src/mbio-utils.o
src/microbiomeComputations.so
tests/testthat.R
tests/testthat/test-AbsoluteAbundanceData.R
tests/testthat/test-AbundanceData.R
tests/testthat/test-Comparator.R
tests/testthat/test-alphaDiv.R
tests/testthat/test-betaDiv.R
tests/testthat/test-correlation.R
tests/testthat/test-differentialAbundance.R
tests/testthat/test-rankedAbundance.R
tests/testthat/test-rcpp.R
