API for VEuPathDB/plot.data
Create `data.table`s of Ready to Plot Data
| Global functions | |
|---|---|
| %>% | Man page |
| ContingencyTable | Man page |
| ContingencyTable-class | Man page |
| CorrelationLink | Man page |
| CorrelationLink,Node,Node-method | Man page |
| CorrelationLink,NodeId,NodeId-method | Man page |
| CorrelationLink,character,character-method | Man page |
| CorrelationLink,missing,missing-method | Man page |
| CorrelationLink,numeric,numeric-method | Man page |
| CorrelationLink-class | Man page |
| CorrelationLinkList | Man page |
| CorrelationLinkList,SimpleList-method | Man page |
| CorrelationLinkList,data.frame-method | Man page |
| CorrelationLinkList,list-method | Man page |
| CorrelationLinkList,missing-method | Man page |
| CorrelationLinkList-class | Man page |
| CorrelationNetwork-class | Man page |
| KPartiteNetwork | Man page |
| KPartiteNetwork-class | Man page |
| Link | Man page |
| Link-class | Man page |
| LinkList | Man page |
| LinkList-class | Man page |
| Network-class | Man page |
| Node | Man page |
| Node-class | Man page |
| NodeId | Source code |
| NodeId-class | Man page |
| NodeIdList | Man page |
| NodeIdList-class | Man page |
| NodeList-class | Man page |
| Partition | Man page |
| Partition-class | Man page |
| Partitions | Man page Source code |
| Partitions-class | Man page |
| TwoByTwoTable | Man page |
| TwoByTwoTable-class | Man page |
| addStrataVariableDetails | Source code |
| addVariableDetailsToColumn | Source code |
| adjustToViewport | Man page Source code |
| allStats | Man page |
| avgDigits | Source code |
| bar | Man page Source code |
| bar.dt | Man page Source code |
| beeswarm | Man page Source code |
| beeswarm.dt | Man page Source code |
| bestFitLine | Man page Source code |
| bin | Man page Source code |
| bin.Date | Source code |
| bin.numeric | Source code |
| binCategoryProportion | Source code |
| binGeometricMean | Source code |
| binMean | Source code |
| binMedian | Source code |
| binProportion | Source code |
| binSize | Source code |
| binSlider | Source code |
| binSpec | Source code |
| binWidth | Source code |
| binWidthToNumBins | Source code |
| box | Man page Source code |
| box.dt | Man page Source code |
| check_contingency_table | Source code |
| check_correlation_link | Source code |
| check_correlation_link_list | Source code |
| check_correlation_network | Source code |
| check_kpartite_network | Source code |
| check_link | Source code |
| check_link_list | Source code |
| check_network | Source code |
| check_node | Source code |
| check_node_id | Source code |
| check_node_id_list | Source code |
| check_node_list | Source code |
| check_partitions | Source code |
| check_twobytwo_table | Source code |
| chiSq | Source code |
| chiSqResults | Man page |
| collapseByGroup | Source code |
| completeCasesTable | Source code |
| contingencyDT | Man page Source code |
| correlationOrEmpty | Source code |
| densityCurve | Man page Source code |
| fences | Man page Source code |
| filterToGeolocationViewport | Man page Source code |
| findBinEnd | Source code |
| findBinSliderValues | Source code |
| findBinSliderValues.Date | Source code |
| findBinSliderValues.numeric | Source code |
| findBinStart | Source code |
| findBinWidth | Man page Source code |
| findBinWidth.Date | Source code |
| findBinWidth.NULL | Source code |
| findBinWidth.logical | Source code |
| findBinWidth.numeric | Source code |
| findGeolocationViewport | Source code |
| findNumBins | Source code |
| findViewport | Source code |
| fishersTest | Man page |
| formatPValue | Source code |
| formatProportionSampleSize | Source code |
| formatSimpleSampleSize | Source code |
| generate_node_id | Source code |
| geometricMeanCI | Source code |
| getDuplicateLinks | Man page |
| getInteractionColsList | Source code |
| getIsolatedNodes | Man page |
| getJSON | Source code |
| getLinkUniqueString | Source code |
| getMode | Source code |
| getPDAttributes | Source code |
| getPartitionIndex | Man page |
| getQuadrantValues | Man page |
| getR2 | Source code |
| getR2.default | Source code |
| groupBestFitLine | Source code |
| groupCorrelation | Source code |
| groupDensity | Source code |
| groupFences | Source code |
| groupMean | Source code |
| groupMedian | Source code |
| groupOutliers | Source code |
| groupProportion | Source code |
| groupSD | Source code |
| groupSize | Source code |
| groupSmoothedMean | Source code |
| groupSplit | Source code |
| groupSummary | Source code |
| heatmap | Man page Source code |
| heatmap.dt | Man page Source code |
| histogram | Man page Source code |
| histogram.dt | Man page Source code |
| isIntraPartitionLink | Source code |
| isValidEdgeList | Source code |
| lineplot | Man page Source code |
| lineplot.dt | Man page Source code |
| linkAboveWeightThreshold | Source code |
| linkBelowWeightThreshold | Source code |
| makePanels | Man page Source code |
| mapMarkers | Man page Source code |
| mapMarkers.dt | Man page Source code |
| meanCI | Source code |
| medianCI | Source code |
| mosaic | Man page Source code |
| mosaic.dt | Man page Source code |
| negPredictiveValue | Man page |
| newBarPD | Source code |
| newBeeswarmPD | Source code |
| newBoxPD | Source code |
| newHeatmapPD | Source code |
| newHistogramPD | Source code |
| newLinePD | Source code |
| newMapMarkersPD | Man page Source code |
| newMosaicPD | Source code |
| newPlotdata | Source code |
| newScatterPD | Source code |
| nonparametricByGroup | Source code |
| nonparametricTest | Source code |
| numBins | Source code |
| numBinsToBinWidth | Source code |
| numBinsToBinWidth.Date | Source code |
| numBinsToBinWidth.default | Source code |
| oddsRatio | Man page |
| orderByReferenceValues | Man page |
| outliers | Man page Source code |
| panelAllStats | Source code |
| panelBothRatios | Source code |
| panelChiSq | Source code |
| panelTable | Source code |
| plot.data | Man page |
| plot.data-package | Man page |
| plotRefMapToList | Source code |
| posPredictiveValue | Man page |
| predictdf | Source code |
| predictdf.default | Source code |
| predictdf.gam | Source code |
| predictdf.loess | Source code |
| prevalence | Man page |
| proportionCI | Source code |
| proportionSampleSize | Source code |
| pruneCorrelationLinks | Man page |
| pruneCorrelationLinks,CorrelationLinkList-method | Man page |
| pruneCorrelationLinks,CorrelationNetwork-method | Man page |
| pruneDuplicateLinks | Man page |
| pruneIsolatedNodes | Man page |
| pruneLinksAboveWeight | Man page Source code |
| pruneLinksBelowWeight | Man page Source code |
| pruneLinksByCorrelationCoef | Man page Source code |
| pruneLinksByPValue | Man page Source code |
| pruneLinksByPredicate | Man page |
| pruneViewportAdjustmentFromBins | Source code |
| recodeValues | Source code |
| relativeRisk | Man page |
| removeGroupPanel | Source code |
| roundedGeometricMean | Source code |
| roundedMean | Source code |
| roundedMedian | Source code |
| roundedQuantile | Source code |
| roundedRatio | Source code |
| roundedSD | Source code |
| sampleSizeTable | Source code |
| scattergl | Man page Source code |
| scattergl.dt | Man page Source code |
| sensitivity | Man page |
| simpleSampleSize | Source code |
| smoothedMean | Man page Source code |
| specificity | Man page |
| statsTable | Source code |
| tableAsDT | Source code |
| tableXY | Source code |
| toJSON,BaseNetwork-method | Man page |
| toJSON,CorrelationNetwork-method | Man page |
| toJSON,KPartiteNetwork-method | Man page |
| toJSON,Link-method | Man page |
| toJSON,Node-method | Man page |
| toJSON,Partitions-method | Man page |
| updateType | Source code |
| validateBarPD | Source code |
| validateBeeswarmPD | Source code |
| validateBinSlider | Source code |
| validateBoxPD | Source code |
| validateGeolocationViewport | Source code |
| validateHeatmapPD | Source code |
| validateHistogramPD | Source code |
| validateLinePD | Source code |
| validateMap | Source code |
| validateMapMarkersPD | Source code |
| validateMosaicPD | Source code |
| validatePlotdata | Source code |
| validateScatterPD | Source code |
| validateValues | Source code |
| validateViewport | Source code |
| variablesList | Source code |
| viewport | Source code |
| writeJSON | Man page Source code |
| writeNetworkJSON | Man page |
| writeNetworkJSON,BaseNetwork-method | Man page |
| writeNetworkJSON,Network-method | Man page |
| zexact | Source code |
