megastudyDataReal: Some Real Life Popbio Megastudy Test Data

In VEuPathDB/veupathUtils: General Helper Functions for VEuPathDB Projects

Some Real Life Popbio Megastudy Test Data

Description

It is the data used in the subset associated w this saved analysis: https://vectorbase.org/vectorbase/app/workspace/maps/A4nuqcm/import as of 9 Jan 2024. As of the time of writing the filters in this analysis are like this: "filters": [ "entityId": "EUPATH_0000605", "variableId": "POPBIO_8000215", "stringSet": "VBP0000844" , "type": "stringSet" , "entityId": "GAZ_00000448", "variableId": "EUPATH_0000542", "stringSet": "Canyon Rim Church" , "type": "stringSet" , "variableId": "EUPATH_0043256", "entityId": "OBI_0000659", "type": "dateRange", "min": "2022-05-01T00:00:00Z", "max": "2022-11-01T00:00:00Z" , "type": "numberRange", "variableId": "OBI_0001620", "entityId": "GAZ_00000448", "min": 40.698307645373106, "max": 40.71193901146775 , "type": "longitudeRange", "variableId": "OBI_0001621", "entityId": "GAZ_00000448", "left": -111.8212938308716, "right": -111.79749727249147 ]

Usage

megastudyDataReal

Format

megastudyDataReal

A data frame with 14 rows and 9 columns:

EUPATH_0000609.Sample_stable_id

Stable ID for the Sample entity

OBI_0000659.ParentOfSample_stable_id

Stable ID for the Collections entity

GAZ_00000448.GeographicLocation_stable_id

Stable ID for the ⁠Collection sites⁠ entity

EUPATH_0000605.Study_stable_id

Stable ID for the Studies entity

EUPATH_0000609.PATO_0000047

Sample -> Sex

EUPATH_0000609.POPBIO_8000017

Sample -> Unbiased Specimen Count

EUPATH_0000609.OBI_0001909

Sample -> Species

EUPATH_0000609.EUPATH_0043227

Sample -> Female Insect Feeding Status

EUPATH_0000609.UBERON_0000105

Sample -> Life Cycle Stage

Source

https://vectorbase.org/vectorbase/app/workspace/maps/A4nuqcm/import

VEuPathDB/veupathUtils documentation built on Feb. 8, 2025, 12:29 p.m.