pca: PCA
In VEuPathDB/veupathUtils: General Helper Functions for VEuPathDB Projects
pca R Documentation
PCA
Description
PCA
Usage
pca(collection, nPCs = 10, ntop = 500, verbose = c(TRUE, FALSE))
Arguments
collection
A Collection object
nPCs
Number of principal components to return. Default 10
ntop
Use the top ntop genes with the highest variance for the pca computation. Mirrors the deseq2 plotPCA argument. Default 500.
verbose
Boolean indicating if extra messaging should be printed.
Value
A ComputeResult object. The data slot contains a data.table with the id columns and the first nPCs principal components.
VEuPathDB/veupathUtils documentation built on Feb. 8, 2025, 12:29 p.m.
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| pca | R Documentation |
PCA
Description
PCA
Usage
pca(collection, nPCs = 10, ntop = 500, verbose = c(TRUE, FALSE))
Arguments
collection |
A Collection object |
nPCs |
Number of principal components to return. Default 10 |
ntop |
Use the top ntop genes with the highest variance for the pca computation. Mirrors the deseq2 plotPCA argument. Default 500. |
verbose |
Boolean indicating if extra messaging should be printed. |
Value
A ComputeResult object. The data slot contains a data.table with the id columns and the first nPCs principal components.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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