Man pages for Vessy/sysBio
A package for modeling biological systems
| addMAreaction | Adding molecular reactions. |
| addMAreactRate | Adding reaction rates |
| addParameters | Adding parameters |
| addRule | Adding rules |
| addSpecies | Adding species |
| makeModel | Creating a model |
| makeODEParameters | Creating representation for reaction parameters |
| makeODERates | Creating representation for reaction rates |
| makeODERules | Creating representation for the rules |
| makeODEs | Creating a residual function for the ODEs solver |
| makeProduct | Creating a product for reaction species |
| makeStMat | Creating a stochastic matrix |
| makeStModel | Creating a propensity function |
| newModel | Creating a new model |
| parseComponents | Parsing reaction components |
| parseReaction | Parsing reactions |
| plotResults | Results visualization |
| printInfo | Print information about the model |
| simulateModel | Model simulation (ordinary differential equation solver) |
| solveStoch | Model simulation (stochastic simulation) |
| speciesDetails | Get info abour species included in the reaction |
| validateModel | Print information about the model |
