printInfo: Print information about the model

In Vessy/sysBio: A package for modeling biological systems

Description

This function prints out info about mode: model name, number of reactions and their types, number of species, and number of ODEs required to represent the model. It also allows users to print detailed info about each of the reactions, species, reaction rates, parameters, rules, and model equations.

Usage

printInfo(x, allDetails = FALSE)

Arguments

x	a model name
allDetails	a flag that specify whether the user wants short or long description of the model (flag set to FALSE).

Value

Textual summary

Examples

exmp <- newModel("This is an example of a new model")
addMAreaction(exmp, react="A = null", "rf", "rb")
addMAreaction(exmp, react="A + B -> 2*AB", "k", name="Forward AB")
addMAreaction(exmp, react="AB -> null", "rAB")

addMAreactRate(exmp, "rf", "fixed", "1")
addMAreactRate(exmp, "rb", "fixed", "0.75")
addMAreactRate(exmp, "k", "fixed", "0.5")
addMAreactRate(exmp, "rAB", "assigned", "p1*A")

addParameters(exmp, "p1", 0.75)
 
addSpecies(exmp, "A", 10)
addSpecies(exmp, "B", 10)
addSpecies(exmp, "AB", 0)

addRule(exmp, "rule B", "ODEs", "B=-0.1*AB")

makeModel(exmp)
  
printInfo(exmp)
printInfo(exmp, allDetails=TRUE)

Vessy/sysBio documentation built on May 9, 2019, 9:55 p.m.