parseReaction: Parsing reactions

In Vessy/sysBio: A package for modeling biological systems

Description

This function parses eaction and transforms the canonical form of a mass action reaction into a format that can be used to describe them as ODEs. This function is called from the "parseReaction.R" function.

Usage

parseReaction(model, reaction, rate, rNumber)

Arguments

model	model name (required)
reaction	reaction (forward reaction only) (required)
rate	reaction rate (required)
rNumber	number of reaction in the model; if reaction is reversible, this number will be defined in the following format: reactionNumber_1 and reactionNumber_2 (required)

Value

This function returns a data frame that contains parsed reaction.

Vessy/sysBio documentation built on May 9, 2019, 9:55 p.m.