newModel: Creating a new model

In Vessy/sysBio: A package for modeling biological systems

Description

Creating a new model object. This object will contain all components of the model and information required to run simulation.

Usage

newModel(x)

Arguments

x	name of the model (required)

Value

This function adds information about rules into the model (given as a first argument of the function). Rules information is stored in the list format and contain the following elements:

• modelName - name of the model

• reaction - list of reactions (empty)

• species - list of species (empty)

• rates - list of reaction rates (empty)

• parameters - list of reaction parameters (empty)

• events - list of events (empty)

• rules - list of rules (empty)

• model - mathematical model of the system (empty)

• odes - mathematical model of the system in ODEs format (empty)

• stochMatrix - stochastic matrix (empty)

• stochModel - stochastic model (propensity function) (empty)

• isChecked - a flag that marks that changes have been done to the model, e.g., new reaction or species added (set to value 0)

Examples

exmp <- newModel("This is an example of a new model")

# Show info about model
exmp

Vessy/sysBio documentation built on May 9, 2019, 9:55 p.m.