Description Usage Arguments Value Examples
Creating a new model object. This object will contain all components of the model and information required to run simulation.
1 | newModel(x)
|
x |
name of the model (required) |
This function adds information about rules into the model (given as a first argument of the function). Rules information is stored in the list format and contain the following elements:
modelName - name of the model
reaction - list of reactions (empty)
species - list of species (empty)
rates - list of reaction rates (empty)
parameters - list of reaction parameters (empty)
events - list of events (empty)
rules - list of rules (empty)
model - mathematical model of the system (empty)
odes - mathematical model of the system in ODEs format (empty)
stochMatrix - stochastic matrix (empty)
stochModel - stochastic model (propensity function) (empty)
isChecked - a flag that marks that changes have been done to the model, e.g., new reaction or species added (set to value 0)
1 2 3 4 | exmp <- newModel("This is an example of a new model")
# Show info about model
exmp
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