README.md

In VoisinneG/flowR: R-shiny interface for the analysis of flow cytometry data

R package: flowR

Guillaume Voisinne 2019 - 12 - 03

flowR

An interface for the analysis of flow cytometry data using R

Install

Rstudio Setup for Windows users (inside CML only)

To install flowR, you will first need to install R and Rstudio. If you use windows 10, you can get and Rstudio using the 'Software Center':

• go to 'Software Center'
• download the latest version of R
• download Rstudio
• open Rstudio

Now we need to create a R library folder with read/write permissions. To do that using R studio, type in the console :

dir.create("C:/Temp/R_library")
cat(".libPaths('C:/Temp/R_library')\n", file = paste0(getwd(), "/.Rprofile"))

Now close and restart Rstudio. By default, all your packages will be saved in C:/Temp/R_library.

Install from github

Install package BiocManager and devtools using

install.packages(c('BiocManager', 'devtools'))

Make sure to set package repositories to their latest versions using:

options(repos = BiocManager::repositories())

The package is available from github. Install it using the devtools package:

devtools::install_github("VoisinneG/flowR")

Use

To run the graphical user interface, type the following command in the R console:

library("flowR")
flowR::run_flowR()

Demo app

The demo app (no installation required) can be accessed here

VoisinneG/flowR documentation built on June 1, 2021, 6:42 p.m.