get_data_gs: Return data from a GatingSet

In VoisinneG/flowR: R-shiny interface for the analysis of flow cytometry data

Description

Return data from a GatingSet

Usage

get_data_gs(
  gs,
  sample = NULL,
  subset = NULL,
  Ncells = NULL,
  spill = NULL,
  return_comp_data = TRUE,
  updateProgress = NULL
)

Arguments

gs	a GatingSet
sample	Names of samples from the GatingSet (as returned by pData(gs)$name)
subset	Names of subsets from the GatingSet (as returned by gh_get_gate_names(gs[[1]]))
Ncells	Maximum number of cells per sample and subset sampled from the GatingSet
spill	spillover matrix. If NULL, uncompensated data is used for gating. Uncompensated data is returned if parameter 'return_comp_data' is TRUE.
return_comp_data	logical. Should compensated data be returned ?
updateProgress	function used in shiny to update a progress bar

Value

a data.frame

VoisinneG/flowR documentation built on June 1, 2021, 6:42 p.m.