batchAdj | linear model adjustment for batch |
blankSub | substract blanks (i.e. negative controls/ background) from... |
coVarTypeStat | automatic covariate (y-variable) type based univariate... |
cvCalc | calculate the analytical coefficient of variation from a set... |
cytoScapeMap | Generate cytoscape map files from peakTable |
example_Exp_MS1features | example experimental MS1 feature table (retention time subset... |
hotEllipse | Hotellings T2 statistic and ellipse calculation function... |
lmResDiff | linear model residual differences by subtraction and... |
loessFitKfoldCV | loess with n - fold CV function |
loessSmooth | pooled quality control based signal drift/ attenuation... |
loessWrapperMod | adapted from 'bisoreg' package |
logTrans | log transform peak table |
manhattanPlot | manhattan plot function |
pcaClustId | Identify clusters in a PCA plot from a list of co-variates... |
pcaOutId | Identify outliers in a PCA plot based on expansion of... |
pcaResOut | expand hotellings ellipse from a pcaRes object 'pcaRes' and... |
plotPcsEx | plot PCA with expanded Hotelling's ellipse adapted from... |
preProc | preProc - combined pre-processing steps of the MetMSLine... |
ramClustMod | 'ramclustR' - modified for MetMSLine |
rtCorrClust | rtCorrClust |
signNorm | Normalize mass spectral data peak table |
tableCheckRead | peak/ co-variate table error handling and/ or read from... |
targMS2csv | Generate target list (.csv) file from subset peak table |
volcanoPlot | Volcano plot slightly modified from 'VolcanoPlot' from the... |
zeroFill | zero fill peak table |
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