Files in WMBEdmands/MetMSLine
an automated and fully integrated pipeline for rapid processing of high-resolution LC-MS metabolomic datasets.

DESCRIPTION
IMAGES/Example DBAnnotate process.png
IMAGES/Example.Hierarchical.clustering.results.PNG
IMAGES/Example.MS.MS.match.results.PNG
IMAGES/M237T212.Y_variable_4.png
IMAGES/M237T212.Y_variable_4_BOXPLOT.png
IMAGES/M759T55 .png
IMAGES/M759T55 CORR .png
IMAGES/MSConvert_settings_MS1.PNG
IMAGES/MSConvert_settings_MS2.PNG
IMAGES/MS_MS_example.png
IMAGES/PCA_scores_model_1.png
IMAGES/PCA_scores_model_2.png
IMAGES/Sum_reprod_feat_example.PNG
IMAGES/X_X_heatmap.PNG
IMAGES/X_Y_heatmap.PNG
IMAGES/suggested_subdirectory_structure_A.png
IMAGES/suggested_subdirectory_structure_B.png
LICENSE
NAMESPACE
R/batchAdj.R R/blankSub.R R/coVarTypeStat.R R/cvCalc.R R/cytoScapeMap.R R/example_Exp_MS1features.R R/hotEllipse.R R/lmResDiff.R R/loessFitKfoldCV.R R/loessSmooth.R R/loessWrapperMod.R R/logTrans.R R/manhattanPlot.R R/pcaClustId.R R/pcaOutId.R R/pcaResOut.R R/plotPcsEx.R R/preProc.R R/ramClustMod.R R/rtCorrClust.R R/signNorm.R R/tableCheckRead.R R/targMS2csv.R R/volcanoPlot.R R/zeroFill.R README.md
README.txt
inst/doc/MetMSLine.pdf inst/doc/MetMSLineBasics.pdf
inst/extdata/MS1features_example.csv
inst/extdata/coVariates.csv
inst/extdata/synthetic_MS_data.csv
inst/extdata/synthetic_coVar_data.csv
man/batchAdj.Rd man/blankSub.Rd man/coVarTypeStat.Rd man/cvCalc.Rd man/cytoScapeMap.Rd man/example_Exp_MS1features.Rd man/hotEllipse.Rd man/lmResDiff.Rd man/loessFitKfoldCV.Rd man/loessSmooth.Rd man/loessWrapperMod.Rd man/logTrans.Rd man/manhattanPlot.Rd man/pcaClustId.Rd man/pcaOutId.Rd man/pcaResOut.Rd man/plotPcsEx.Rd man/preProc.Rd man/ramClustMod.Rd man/rtCorrClust.Rd man/signNorm.Rd man/tableCheckRead.Rd man/targMS2csv.Rd man/volcanoPlot.Rd man/zeroFill.Rd vignettes/MetMSLine.R vignettes/MetMSLine.Rmd
vignettes/MetMSLine.html
vignettes/MetMSLine.pdf vignettes/MetMSLineBasics.R vignettes/MetMSLineBasics.Rmd
vignettes/MetMSLineBasics.html
vignettes/MetMSLineBasics.pdf
WMBEdmands/MetMSLine documentation built on June 3, 2017, 8:51 a.m.