Files in WMBEdmands/MetMSLine
an automated and fully integrated pipeline for rapid processing of high-resolution LC-MS metabolomic datasets.
DESCRIPTION
IMAGES/Example DBAnnotate process.png
IMAGES/Example.Hierarchical.clustering.results.PNG
IMAGES/Example.MS.MS.match.results.PNG
IMAGES/M237T212.Y_variable_4.png
IMAGES/M237T212.Y_variable_4_BOXPLOT.png
IMAGES/M759T55 .png
IMAGES/M759T55 CORR .png
IMAGES/MSConvert_settings_MS1.PNG
IMAGES/MSConvert_settings_MS2.PNG
IMAGES/MS_MS_example.png
IMAGES/PCA_scores_model_1.png
IMAGES/PCA_scores_model_2.png
IMAGES/Sum_reprod_feat_example.PNG
IMAGES/X_X_heatmap.PNG
IMAGES/X_Y_heatmap.PNG
IMAGES/suggested_subdirectory_structure_A.png
IMAGES/suggested_subdirectory_structure_B.png
LICENSE
NAMESPACE
R/batchAdj.R
R/blankSub.R
R/coVarTypeStat.R
R/cvCalc.R
R/cytoScapeMap.R
R/example_Exp_MS1features.R
R/hotEllipse.R
R/lmResDiff.R
R/loessFitKfoldCV.R
R/loessSmooth.R
R/loessWrapperMod.R
R/logTrans.R
R/manhattanPlot.R
R/pcaClustId.R
R/pcaOutId.R
R/pcaResOut.R
R/plotPcsEx.R
R/preProc.R
R/ramClustMod.R
R/rtCorrClust.R
R/signNorm.R
R/tableCheckRead.R
R/targMS2csv.R
R/volcanoPlot.R
R/zeroFill.R
README.md
README.txt
inst/doc/MetMSLine.pdf
inst/doc/MetMSLineBasics.pdf
inst/extdata/MS1features_example.csv
inst/extdata/coVariates.csv
inst/extdata/synthetic_MS_data.csv
inst/extdata/synthetic_coVar_data.csv
man/batchAdj.Rd
man/blankSub.Rd
man/coVarTypeStat.Rd
man/cvCalc.Rd
man/cytoScapeMap.Rd
man/example_Exp_MS1features.Rd
man/hotEllipse.Rd
man/lmResDiff.Rd
man/loessFitKfoldCV.Rd
man/loessSmooth.Rd
man/loessWrapperMod.Rd
man/logTrans.Rd
man/manhattanPlot.Rd
man/pcaClustId.Rd
man/pcaOutId.Rd
man/pcaResOut.Rd
man/plotPcsEx.Rd
man/preProc.Rd
man/ramClustMod.Rd
man/rtCorrClust.Rd
man/signNorm.Rd
man/tableCheckRead.Rd
man/targMS2csv.Rd
man/volcanoPlot.Rd
man/zeroFill.Rd
vignettes/MetMSLine.R
vignettes/MetMSLine.Rmd
vignettes/MetMSLine.html
vignettes/MetMSLine.pdf
vignettes/MetMSLineBasics.R
vignettes/MetMSLineBasics.Rmd
vignettes/MetMSLineBasics.html
vignettes/MetMSLineBasics.pdf
