loessFitKfoldCV: loess with n - fold CV function

In WMBEdmands/MetMSLine: an automated and fully integrated pipeline for rapid processing of high-resolution LC-MS metabolomic datasets.

Description

loess with n - fold CV function

Usage

loessFitKfoldCV(x, y, feature, smoothSpan = NULL, folds = 7,
  plotFile = NULL, colours = NULL)

Arguments

x	predictor values
y	response values
feature	LC-MS feature.
smoothSpan	fixed smoothing span. If supplied a this fixed smoothing span parameter will override the cross validated feature-by-feature smoothing span optimization.
folds	numeric (default=7, i.e. 7-fold cross validation).
plotFile	character full path to plot file png (optional). If supplied a plot file will be generated at this location showing the before and after loess smoothing result.
colours	vector of colours for datapoints (i.e. red for QCs and black for samples). (optional if plot file supplied then this argument is required). Argument is passed to plot col.

Value

vector smoothed feature and smoothing span parameter selected concatenated to end.

WMBEdmands/MetMSLine documentation built on May 9, 2019, 10:03 p.m.