getXY: X and Y data

In WarrenDavidAnderson/dynamicNetworkID:

Description

This function function for getting the X and Y data (Equation 10, Anderson et al., 2017).

Usage

getXY(datHMF = datHMF, Mall = NULL, Msc = 2, n = 1, Harg0 = NULL)

Arguments

datHMF	The data matrix with scaled measurements measurements. Scaled center measurements are provided for each measurement/annotation (e.g., gene/organ) combination. This format is produced by scale_zeroOne(). Defaults to datHMF.
Mall	A set of m-values. Defaults to NULL.
Msc	A scale factor that determines the M value (M = max(m)) corresponding to the largest range of m-values. Mmax <- ceiling(Msc * Np / 2) where Np = number of parameters.
n	Highest order of the system (n=1 for the first degree system that this analysis was designed for).
Harg0	If omega_0 is equal to zero (x=0), set omega_0 to Harg0 (w=Harg0).

Value

The X and Y transformations obtained using Equations 4-6 for all m-value ranges

References

http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005627

Examples

XY = getXY(datHMF,Mall=Mall,Msc=Msc,n=n,Harg0=Harg0)

WarrenDavidAnderson/dynamicNetworkID documentation built on May 23, 2019, 4:23 p.m.