sim_best: Implement simulation

In WarrenDavidAnderson/dynamicNetworkID:

Description

This function performs a simulation for a single set of simulation parameters.

Usage

sim_best(best_params = NULL, mRange_best = NULL, tsim = NULL,
  numPar = NULL, XY = NULL, datHMF = NULL, ic = NULL)

Arguments

mRange_best	A set of m-values.
tsim	simulation time vector.
numPar	Number of simulation parameters.
XY	Object generated by getXY().
datHMF	The data matrix with scaled measurements measurements. Scaled center measurements are provided for each measurement/annotation (e.g., gene/organ) combination. This format is produced by scale_zeroOne().
ic	Initial conditions.

Value

Simulation results

Examples

best_sims = sim_best(best_params,mRange_best,tsim,numPar,XY,datHMF,ic)
best_sims$simulations[,1] = best_sims$simulations[,1] + min(datHMF[,1])

WarrenDavidAnderson/dynamicNetworkID documentation built on May 23, 2019, 4:23 p.m.