calc_rho_psi_refit: Calculate rho and psi values from a refit suggestion
In Wedge-Oxford/battenberg: Battenberg subclonal copy number caller
calc_rho_psi_refit R Documentation
Calculate rho and psi values from a refit suggestion
Description
Use this function to calculate the refit values from a refit suggestion.
Usage
calc_rho_psi_refit(refBAF, refLogR, refMajor, refMinor, rho, gamma_param)
Arguments
refBAF
BAF of the segment
refLogR
logR of the segment
refMajor
Major allele copy number
refMinor
Minor allele copy number
rho
Sample rho parameter
gamma_param
Platform gamma parameter
Value
A list with a field for rho and psi_t
Author(s)
sd11
Wedge-Oxford/battenberg documentation built on Aug. 4, 2023, 6:27 p.m.
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| calc_rho_psi_refit | R Documentation |
Calculate rho and psi values from a refit suggestion
Description
Use this function to calculate the refit values from a refit suggestion.
Usage
calc_rho_psi_refit(refBAF, refLogR, refMajor, refMinor, rho, gamma_param)
Arguments
refBAF |
BAF of the segment |
refLogR |
logR of the segment |
refMajor |
Major allele copy number |
refMinor |
Minor allele copy number |
rho |
Sample rho parameter |
gamma_param |
Platform gamma parameter |
Value
A list with a field for rho and psi_t
Author(s)
sd11
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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