call_multisample_MSAI: Generates haplotype blocks, MSAI results, and plots from...

In Wedge-Oxford/battenberg: Battenberg subclonal copy number caller

Generates haplotype blocks, MSAI results, and plots from phasing information contained in multisample Battenberg runs

Description

Generates haplotype blocks, MSAI results, and plots from phasing information contained in multisample Battenberg runs

Usage

call_multisample_MSAI(
  rdsprefix,
  subclonesfiles,
  chrom_names,
  tumournames,
  plotting = T
)

Arguments

rdsprefix	Prefix of the RDS files containing the multisample haplotypes and BAF
subclonesfiles	Vectors containing the paths to the different subclones.txt files
chrom_names	Names of the chromosomes
tumournames	Vector of sample names
plotting	Should the multisample phasing plots be made? (Default: TRUE)

Author(s)

jdemeul

Wedge-Oxford/battenberg documentation built on Aug. 4, 2023, 6:27 p.m.