combine.impute.output: Concatenate the impute output generated for each of the...
In Wedge-Oxford/battenberg: Battenberg subclonal copy number caller

combine.impute.output

R Documentation

Concatenate the impute output generated for each of the regions.

This function assembles the impute output generated.

combine.impute.output(
  inputfile.prefix,
  outputfile,
  is.male,
  imputeinfofile,
  region.size = 5000000,
  chrom = NA
)

`inputfile.prefix`	Prefix of the input files (this is typically the outputfile.prefix option supplied when calling run.impute).
`outputfile`	Where to store the output.
`is.male`	Boolean describing whether the sample is male (TRUE) or female (FALSE).
`imputeinfofile`	Path to the imputeinfofile on disk.
`region.size`	An integer describing the region size to be used by impute (optional).
`chrom`	The name of a chromosome on which this function should run (names are used, supply X as 'X').