combine.impute.output: Concatenate the impute output generated for each of the...

In Wedge-Oxford/battenberg: Battenberg subclonal copy number caller

Concatenate the impute output generated for each of the regions.

Description

This function assembles the impute output generated.

Usage

combine.impute.output(
  inputfile.prefix,
  outputfile,
  is.male,
  imputeinfofile,
  region.size = 5000000,
  chrom = NA
)

Arguments

inputfile.prefix	Prefix of the input files (this is typically the outputfile.prefix option supplied when calling run.impute).
outputfile	Where to store the output.
is.male	Boolean describing whether the sample is male (TRUE) or female (FALSE).
imputeinfofile	Path to the imputeinfofile on disk.
region.size	An integer describing the region size to be used by impute (optional).
chrom	The name of a chromosome on which this function should run (names are used, supply X as 'X').

Author(s)

dw9

Wedge-Oxford/battenberg documentation built on April 13, 2025, 5:15 a.m.