allele_ratio_plot: Plot allele ratios from raw segmented data

In Wedge-lab/battenberg: Battenberg subclonal copy number caller

Plot allele ratios from raw segmented data

Description

Plot allele ratios from raw segmented data

Usage

allele_ratio_plot(
  samplename,
  bafsegmented,
  logrsegmented,
  outputfile,
  logr,
  max.plot.cn = 5
)

Arguments

samplename	Name of the sample for the plot title
bafsegmented	The BAFsegmented data read in as a data.frame
logrsegmented	The logRsegmented data read in as a data.frame
outputfile	Full path of file where the figure is to be stored
logr	A data.frame with the logr, either logr or allelecounts must be supplied
max.plot.cn	Maximum y-axis value to plot (Default: 5)

Author(s)

sd11

Wedge-lab/battenberg documentation built on July 31, 2023, 1:32 p.m.