call_multisample_MSAI: Generates haplotype blocks, MSAI results, and plots from...
In Wedge-lab/battenberg: Battenberg subclonal copy number caller
View source: R/haplotype_external.R
call_multisample_MSAI R Documentation
Generates haplotype blocks, MSAI results, and plots from phasing information contained in multisample Battenberg runs
Description
Generates haplotype blocks, MSAI results, and plots from phasing information contained in multisample Battenberg runs
Usage
call_multisample_MSAI(
rdsprefix,
subclonesfiles,
chrom_names,
tumournames,
plotting = T
)
Arguments
rdsprefix
Prefix of the RDS files containing the multisample haplotypes and BAF
subclonesfiles
Vectors containing the paths to the different subclones.txt files
chrom_names
Names of the chromosomes
tumournames
Vector of sample names
plotting
Should the multisample phasing plots be made? (Default: TRUE)
Author(s)
jdemeul
Wedge-lab/battenberg documentation built on July 31, 2023, 1:32 p.m.
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View source: R/haplotype_external.R
| call_multisample_MSAI | R Documentation |
Generates haplotype blocks, MSAI results, and plots from phasing information contained in multisample Battenberg runs
Description
Generates haplotype blocks, MSAI results, and plots from phasing information contained in multisample Battenberg runs
Usage
call_multisample_MSAI(
rdsprefix,
subclonesfiles,
chrom_names,
tumournames,
plotting = T
)
Arguments
rdsprefix |
Prefix of the RDS files containing the multisample haplotypes and BAF |
subclonesfiles |
Vectors containing the paths to the different subclones.txt files |
chrom_names |
Names of the chromosomes |
tumournames |
Vector of sample names |
plotting |
Should the multisample phasing plots be made? (Default: TRUE) |
Author(s)
jdemeul
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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