plot.haplotype.data: Plot haplotyped SNPs
In Wedge-lab/battenberg: Battenberg subclonal copy number caller
plot.haplotype.data R Documentation
Plot haplotyped SNPs
Description
This function takes haplotyped SNPs and plots them to a png file.
Usage
## S3 method for class 'haplotype.data'
plot(haplotyped.baf.file, imageFileName, samplename, chrom, chr_names)
Arguments
haplotyped.baf.file
File containing the haplotyped SNP info.
imageFileName
Filename as which the png will be saved.
samplename
Name of the sample to be used in image title.
chrom
The chromosome that is plotted.
chr_names
A list of allowed chromosome names.
Author(s)
dw9
Wedge-lab/battenberg documentation built on July 31, 2023, 1:32 p.m.
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| plot.haplotype.data | R Documentation |
Plot haplotyped SNPs
Description
This function takes haplotyped SNPs and plots them to a png file.
Usage
## S3 method for class 'haplotype.data'
plot(haplotyped.baf.file, imageFileName, samplename, chrom, chr_names)
Arguments
haplotyped.baf.file |
File containing the haplotyped SNP info. |
imageFileName |
Filename as which the png will be saved. |
samplename |
Name of the sample to be used in image title. |
chrom |
The chromosome that is plotted. |
chr_names |
A list of allowed chromosome names. |
Author(s)
dw9
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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