read_table_generic: Generic reading function using the readr R package, tailored...

In Wedge-lab/battenberg: Battenberg subclonal copy number caller

Generic reading function using the readr R package, tailored for reading in genomic data

Description

Generic reading function using the readr R package, tailored for reading in genomic data

Usage

read_table_generic(
  file,
  header = T,
  row.names = F,
  stringsAsFactor = F,
  sep = "\t",
  chrom_col = 1,
  skip = 0
)

Arguments

file	Filename of the file to read in
header	Whether the file contains a header (Default: TRUE)
row.names	Whether the file contains row names (Default: FALSE)
stringsAsFactor	Legacy parameter that is no longer used (Default: FALSE)
sep	Column separator (Default: \t)
chrom_col	The column number that contains chromosome denominations. This column will automatically be cast as a character. Should be counted including the row.names (Default: 1)
skip	The number of rows to skip before reading (Default: 0)

Value

A data frame with contents of the file

Wedge-lab/battenberg documentation built on July 31, 2023, 1:32 p.m.