alleleCount: Run alleleCount
In Wedge-lab/dpclust3p: Dirichlet Process Clustering Pre-Processing Package
alleleCount R Documentation
Run alleleCount
Description
Count the alleles for specified locations in the loci file. Expects alleleCount binary in $PATH
Usage
alleleCount(locifile, bam, outfile, min_baq = 20, min_maq = 35)
Arguments
locifile
A file with at least chromsome and position columns of the locations to be counted
bam
A bam file
outfile
Where to store the output
min_baq
The minimum base quality required for a read to be counted
min_maq
The minimum mapping quality required for a read to be counted
Author(s)
sd11
Wedge-lab/dpclust3p documentation built on June 14, 2025, 4:24 p.m.
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| alleleCount | R Documentation |
Run alleleCount
Description
Count the alleles for specified locations in the loci file. Expects alleleCount binary in $PATH
Usage
alleleCount(locifile, bam, outfile, min_baq = 20, min_maq = 35)
Arguments
locifile |
A file with at least chromsome and position columns of the locations to be counted |
bam |
A bam file |
outfile |
Where to store the output |
min_baq |
The minimum base quality required for a read to be counted |
min_maq |
The minimum mapping quality required for a read to be counted |
Author(s)
sd11
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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