get_bb_cn_catalog: Count how often each of the categories is present in this...
In Wedge-lab/dpclust3p: Dirichlet Process Clustering Pre-Processing Package

get_bb_cn_catalog

R Documentation

Count how often each of the categories is present in this sample

Description

Count how often each of the categories is present in this sample

Usage

get_bb_cn_catalog(
  infile,
  outfile,
  size_categories = c(`3` = 10^3, `4` = 10^4, `5` = 10^5, `6` = 10^6, `7` = 10^7, `8` =
    10^8, `9` = 10^9, `10` = 10^10)
)

Arguments

`infile`	string pointing to a collated Battenberg subclones file with extended CNA categories
`outfile`	string pointing to where the catalog should be written
`size_categories`	named vector with the size options to consider. This should be the same vector given to extend_bb_cn_categories