createProjectFile: Creates a DPClust project master file

In Wedge-lab/dpclust3p: Dirichlet Process Clustering Pre-Processing Package

Creates a DPClust project master file

Description

Creates a DPClust project master file

Usage

createProjectFile(
  outputfile,
  donornames,
  samplenames,
  sex,
  purities = NULL,
  rho_and_psi_files = NULL,
  datafiles = paste(samplenames, "_allDirichletProcessInfo.txt", sep = ""),
  cndatafiles = NULL,
  indeldatafiles = NULL
)

Arguments

outputfile	Full path with filename where the output will be written
donornames	A vector with donor identifiers, use the same donor identifier to match multiple samplenames for a multi-sample DPClust run
samplenames	A vector with sample identifiers
sex	A vector with the sex of each donor
purities	A vector with a purity value per sample
datafiles	Vector with filenames in which the DPClust input is contained (Default: [samplename]_allDirichletProcessInfo.txt)
cndatafiles	A vector with CNA DPClust input files (Default: NULL)
indeldatafiles	A vector with indel DPClust input files (Default: NULL)

Author(s)

sd11

Wedge-lab/dpclust3p documentation built on June 14, 2025, 4:24 p.m.