ascatNgsToBattenberg: Transform ASCAT NGS output into Battenberg
In Wedge-lab/dpclust3p: Dirichlet Process Clustering Pre-Processing Package

ascatNgsToBattenberg

R Documentation

Transform ASCAT NGS output into Battenberg

Description

This function takes the ascat copynumber.caveman.csv and samplestatistics files to create a minimum Battenberg subclones and rho_and_psi file for use in pre-processing. These files only contain the essentials required by this package.

Usage

ascatNgsToBattenberg(
  outfile.prefix,
  copynumber.caveman.file,
  samplestatistics.file
)

Arguments

`outfile.prefix`	String prefix for the output files. Internally _subclones.txt and _rho_and_psi.txt will be added.
`copynumber.caveman.file`	String pointing to an ASCAT NGS copynumber.caveman.csv file
`samplestatistics.file`	String point to an ASCAT NGS samplestatistics.csv file