DensityDiffView | R Documentation |
Plot the density of beta score deviations.
DensityDiffView(
beta,
ctrlname = "Control",
treatname = "Treatment",
main = NULL,
filename = NULL,
width = 5,
height = 4,
...
)
beta |
Data frame, including |
ctrlname |
A character, specifying the name of control sample. |
treatname |
A character, specifying the name of treatment sample. |
main |
As in 'plot'. |
filename |
Figure file name to create on disk. Default filename="NULL", which means no output. |
width |
As in ggsave. |
height |
As in ggsave. |
... |
Other parameters in ggsave. |
An object created by ggplot
, which can be assigned and further customized.
Wubing Zhang
data(mle.gene_summary)
# Read beta score from gene summary table in MAGeCK MLE results
dd = ReadBeta(mle.gene_summary)
# Density plot of beta score deviation between control and treatment
DensityDiffView(dd, ctrlname = "dmso", treatname = "plx")
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