Description Usage Arguments Value Author(s) See Also

Scatter plot supporting groups.

1 2 3 4 5 6 7 | ```
ScatterView(data, x = "x", y = "y", label = 0, label.top = TRUE,
top = 0, toplabels = NULL, model = c("none", "ninesquare",
"volcano", "rank")[1], groups = NULL, group_col = NULL,
groupnames = NULL, auto_cut = TRUE, auto_cut_x = auto_cut,
auto_cut_y = auto_cut, auto_cut_diag = auto_cut, x_cut = NULL,
y_cut = NULL, slope = 1, intercept = NULL, display_cut = TRUE,
legend = FALSE, main = NULL, xlab = x, ylab = y, ...)
``` |

`data` |
Data frame. |

`x` |
A character, specifying the x-axis. |

`y` |
A character, specifying the y-axis. |

`label` |
An integer or a character specifying the column used as the label, default value is 0 (row names). |

`label.top` |
Boolean, indicates whether label the name of top hits in the groups. |

`top` |
Integer, specifying the number of top terms in the groups to be labeled. |

`toplabels` |
Character vector, specifying terms to be labeled. |

`model` |
One of "none" (default), "ninesquare", "volcano", and "rank". |

`groups` |
Specify the colored groups. Optional groups include "topleft", "topcenter", "topright", "midleft", "midcenter", "midright", "bottomleft", "bottomcenter", "bottomright". |

`group_col` |
A vector of colors for specified groups. |

`groupnames` |
A vector of group names to show on the legend. |

`auto_cut` |
Boolean, take 1.5 fold standard deviation as cutoff. |

`auto_cut_x` |
Boolean, take 1.5 fold standard deviation as cutoff on x-axis. |

`auto_cut_y` |
Boolean, take 1.5 fold standard deviation as cutoff on y-axis. |

`auto_cut_diag` |
Boolean, take 1.5 fold standard deviation as cutoff on diagonal. |

`x_cut` |
An one or two-length numeric vector, specifying the cutoff used for x-axis. |

`y_cut` |
An one or two-length numeric vector, specifying the cutoff used for y-axis. |

`slope` |
A numberic value indicating slope of the diagonal cutoff. |

`intercept` |
A numberic value indicating intercept of the diagonal cutoff. |

`display_cut` |
Boolean, indicating whether display the dashed line of cutoffs. |

`legend` |
Whether show the color legend. |

`main` |
Title of the figure. |

`xlab` |
Title of x-axis |

`ylab` |
Title of y-axis. |

`...` |
Other available parameters in function 'geom_text_repel'. |

An object created by `ggplot`

, which can be assigned and further customized.

Wubing Zhang

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