Count2TPM: Convert read counts to transcripts per million (TPM)
In WubingZhang/rMAUPS: Model-Based Analysis of Ubiquitin-Proteome System Based Protein Degradation.
View source: R/TransformCount.R
Count2TPM R Documentation
Convert read counts to transcripts per million (TPM)
Description
Convert read counts to transcripts per million (TPM)
Usage
Count2TPM(countMat, idType = "Ensembl", org = "hsa")
Arguments
countMat
A read count matrix, with geneid as rownames and sample as columns.
idType
Type of gene id.
org
Organism, hsa or mmu.
Value
A tpm expression profile.
Author(s)
Wubing Zhang
WubingZhang/rMAUPS documentation built on March 21, 2022, 8:48 p.m.
R Package Documentation
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View source: R/TransformCount.R
| Count2TPM | R Documentation |
Convert read counts to transcripts per million (TPM)
Description
Convert read counts to transcripts per million (TPM)
Usage
Count2TPM(countMat, idType = "Ensembl", org = "hsa")
Arguments
countMat |
A read count matrix, with geneid as rownames and sample as columns. |
idType |
Type of gene id. |
org |
Organism, hsa or mmu. |
Value
A tpm expression profile.
Author(s)
Wubing Zhang
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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