normalizeProteomeDiscoverer: Normalization of ProteomeDiscoverer-exported proteomic data

In WubingZhang/rMAUPS: Model-Based Analysis of Ubiquitin-Proteome System Based Protein Degradation.

Normalization of ProteomeDiscoverer-exported proteomic data

Description

Normalization of ProteomeDiscoverer-exported proteomic data

Usage

normalizeProteomeDiscoverer(
  prot,
  output = NULL,
  norm = "median",
  log2 = FALSE,
  return = FALSE
)

Arguments

prot	A file (or folder) path of proteomics data. Or a data frame of proteomics data, which includes columns of "Contaminant", "Number of unique peptides", "Gene Symbol", and protein abundance of samples.
output	The path to the output file or directory (when prot is a folder path).
norm	method for normalization.
log2	Boolean, whether perform log2 transformation.
return	Boolean, whether return the data object.

Value

A data frame.

Author(s)

Wubing Zhang

WubingZhang/rMAUPS documentation built on March 21, 2022, 8:48 p.m.