browseProtStructure: View protein sequence positions on protein structure

In WubingZhang/rMAUPS: Model-Based Analysis of Ubiquitin-Proteome System Based Protein Degradation.

View protein sequence positions on protein structure

Description

View protein sequence positions on protein structure

Usage

browseProtStructure(
  protId,
  start,
  end,
  doBrowse = TRUE,
  baseUrl = "https://mupit.icm.jhu.edu/MuPIT_Interactive/?gm=",
 
    checkBaseUrl = "https://mupit.icm.jhu.edu/MuPIT_Interactive/rest/showstructure/check?pos="
)

Arguments

protId	a uniprot id string
start	a vector of start positions
end	a vector of end positions
doBrowse	a boolean indicator on whether to open browser to view protein structure
baseUrl	string for location of mupit service
checkBaseUrl	string for location of mupit service to check availability of protein structure

Value

None

Author(s)

Collin Tokheim

WubingZhang/rMAUPS documentation built on March 21, 2022, 8:48 p.m.