ReadGMT: ReadGMT
In WubingZhang/rMAUPS: Model-Based Analysis of Ubiquitin-Proteome System Based Protein Degradation.
ReadGMT R Documentation
ReadGMT
Description
Parse gmt file to a data.frame
write data frame to a gmt file
Usage
ReadGMT(gmtpath, limit = c(0, Inf))
writeGMT(gene2path, gmtfile)
Arguments
gmtpath
The path to gmt file.
limit
A integer vector of length two, specifying the limit of geneset size.
gene2path
A data frame. The columns should be Gene, Pathway ID, and Pathway Name.
gmtfile
Path to gmt file.
Value
An data.frame, in which the first column is gene, and the second column is pathway name.
Output gmt file to local folder.
Author(s)
Wubing Zhang
Wubing Zhang
Examples
gene2path = gsGetter(type = "Complex")
writeGMT(gene2path, "Protein_complex.gmt")
WubingZhang/rMAUPS documentation built on March 21, 2022, 8:48 p.m.
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| ReadGMT | R Documentation |
ReadGMT
Description
Parse gmt file to a data.frame
write data frame to a gmt file
Usage
ReadGMT(gmtpath, limit = c(0, Inf)) writeGMT(gene2path, gmtfile)
Arguments
gmtpath |
The path to gmt file. |
limit |
A integer vector of length two, specifying the limit of geneset size. |
gene2path |
A data frame. The columns should be Gene, Pathway ID, and Pathway Name. |
gmtfile |
Path to gmt file. |
Value
An data.frame, in which the first column is gene, and the second column is pathway name.
Output gmt file to local folder.
Author(s)
Wubing Zhang
Wubing Zhang
Examples
gene2path = gsGetter(type = "Complex") writeGMT(gene2path, "Protein_complex.gmt")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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