Man pages for WuyangFF95/SynSigEval
Evaluate Results of Mutational Signature Analysis Software on Synthetic Spectra Created by Package SynSigGen
| BestSignatureAnalyzerResult | Find the best SignatureAnalyzer result over a set of output... |
| CopyBestSignatureAnalyzerResult | Find the SignatureAnalyzer results directory with the best... |
| CreateEMuOutput | Prepare input file for EMu from a EMu formatted catalog file. |
| CreatehelmsmanOutput | Prepare input file for helmsman from a helmsman formatted... |
| CreateMultiModalMuSigOutput | Prepare input file for MultiModalMuSig from a MultiModalMuSig... |
| helmsmanCatalog2ICAMS | Read Catalog files or matrices in helmsman format. |
| ICAMSCatalog2EMu | Convert Catalogs from ICAMS format to EMu format |
| ICAMSCatalog2helmsman | Convert Catalogs from ICAMS format to helmsman format |
| ICAMSCatalog2MM | Convert Catalogs from ICAMS format to MM format |
| MMCatalog2ICAMS | Convert Catalogs (File or Matrix) from MM format to ICAMS... |
| Plot96PartOfComposite | Plot the SBS96 part of a SignatureAnalyzer COMPOSITE... |
| PlotCatCOMPOSITE | Plot the a SignatureAnalyzer COMPOSITE signature or catalog... |
| ReadAndAnalyzeExposures | Assess how well inferred exposures match input exposures |
| ReadAndAnalyzeSigs | Assess how well extracted signatures match input signatures |
| ReadEMuCatalog | Read Catalog files in EMu format. |
| ReadEMuExposureFile | Read Exposure files in EMu format. |
| ReadExposureMM | Read Catalog files in MM format |
| ReadhelmsmanExposure | Read Exposure files in helmsman format. |
| ReadSigProfilerExposure | Read a file containing exposures attributed by... |
| RelabelExSigs | Append most similar reference signature and pairwise cosine... |
| SignatureAnalyzerSummarizeSBS1SBS5 | Summarize all sub-directories of SignatureAnalyzer results on... |
| SignatureAnalyzerSummarizeTopLevel | Summarize all subdirectories of SignatureAnalyzer results on... |
| SplitCatCOMPOSITE | Split COMPOSITE (SNS1536+DBS78+ID83) catalogs in ICAMS format... |
| SummarizeMultiRuns | Assess/evaluate multiple summarized runs on one dataset by... |
| SummarizeMultiToolsMultiDatasets | Summarize results for multiple datasets, by different... |
| SummarizeMultiToolsMultiDatasetsAttr | Internal function to summarizing exposure inference measure. |
| SummarizeMultiToolsMultiDatasetsExtr | Internal function to summarizing signature extraction... |
| SummarizeOneToolMultiDatasets | Combine results for multiple datasets, from one computational... |
| SummarizeSigOneAttrSubdir | Assess/evaluate results from packages which can ONLY do... |
| SummarizeSigOneExtrAttrSubdir | Assess/evaluate results from packages which can do BOTH... |
| SummarizeSigOnehelmsmanSubdir | Assess/evaluate results from helmsman.NMF |
| SummarizeSigOneSASubdir | Summarize results (SBS96, DBS, ID or COMPOSITE) from... |
| SummarizeSigOneSigProExtractorSubdir | Assess/evaluate results from SigProExtractor (v0.0.5.45+) |
| SummarizeSigOneSigProSSSubdir | Assess/evaluate results from sigproSS (a.k.a. SigProfiler... |
| SummarizeSigOneSubdir | Assess/evaluate one result sub-folder from a computational... |
| SummarizeSigProExtractor | Summarize SigProfiler results in the sa.sa.96 and/or sp.sp... |
| SynSigEval | SynSigEval |
