SummarizeSigProExtractor: Summarize SigProfiler results in the sa.sa.96 and/or sp.sp...

In WuyangFF95/SynSigEval: Evaluate Results of Mutational Signature Analysis Software on Synthetic Spectra Created by Package SynSigGen

Summarize SigProfiler results in the sa.sa.96 and/or sp.sp subdirectories.

Description

Summarize SigProfiler results in the sa.sa.96 and/or sp.sp subdirectories.

Usage

SummarizeSigProExtractor(
  top.dir,
  sub.dir = c("sa.sa.96", "sp.sp"),
  overwrite = FALSE
)

Arguments

top.dir	The top directory of a conventional data structure containing at least one of the subdirectories: sa.sa.96/sp.results and sp.sp/sp.results; see further documentation elsewhere.
sub.dir	The subdirectory under top.dir, and containing a folder named sp.results. By default, it contains both c("sa.sa","sp.sp"). But you should specify sub.dir = "sp.sp" for top.dir with only the sp.sp subdirectory (as is the case for the correlated SBS1-and-SBS5-containing data sets).
overwrite	If TRUE overwrite and files in existing run.dir/summary folder.

Details

Results are put in standardized subdirectories of top.dir.

WuyangFF95/SynSigEval documentation built on Sept. 18, 2022, 11:41 a.m.