ReadAndAnalyzeSigs: Assess how well extracted signatures match input signatures

In WuyangFF95/SynSigEval: Evaluate Results of Mutational Signature Analysis Software on Synthetic Spectra Created by Package SynSigGen

Assess how well extracted signatures match input signatures

Description

We assume that in many cases extraction programs will be run outside of R on file inputs and will generate fill outputs.

Usage

ReadAndAnalyzeSigs(extracted.sigs, reference.sigs, ground.truth.exposures)

Arguments

extracted.sigs	Path to file containing the extracted signature profiles.
reference.sigs	File containing signature profiles from which the synthetic data were generated.
ground.truth.exposures	File containing the exposures from which the synthetic catalogs were generated. This file is used to restrict assessment to only those signatures in reference.sigs that were actually represented in the exposures.

Details

Generates output files by calling TP_FP_FN_avg_sim

Value

See TP_FP_FN_avg_sim

WuyangFF95/SynSigEval documentation built on Sept. 18, 2022, 11:41 a.m.