helmsmanCatalog2ICAMS: Read Catalog files or matrices in helmsman format.

In WuyangFF95/SynSigEval: Evaluate Results of Mutational Signature Analysis Software on Synthetic Spectra Created by Package SynSigGen

Read Catalog files or matrices in helmsman format.

Description

Read Catalog files or matrices in helmsman format.

Usage

helmsmanCatalog2ICAMS(
  cat,
  region = "unknown",
  catalog.type = "counts.signature"
)

Arguments

cat	Input catalog, can be a tab-delimited text file in helmsman format, or a matrix/data.frame object.
region	Catalog region. Can be a specific genomic or exomic region, or "unknown". Default: "unknown"
catalog.type	Is the catalog a signature catalog, or a spectrum catalog? Default: "counts.signature"

Value

a catalog matrix in ICAMS format.

WuyangFF95/SynSigEval documentation built on Sept. 18, 2022, 11:41 a.m.