Files in YTLogos/ensembldb

Utilities to create and use Ensembl-based annotation databases

R/Classes.R R/Deprecated.R R/Generics.R R/Methods-Filter.R R/Methods.R R/dbhelpers.R R/functions-EnsDb.R R/functions-Filter.R R/functions-create-EnsDb.R R/functions-utils.R R/select-methods.R R/seqname-utils.R R/zzz.R inst/extended_tests/extended_tests.R inst/extended_tests/performance_tests.R inst/pkg-template/R/zzz.R inst/scripts/checkEnsDbs.R inst/scripts/generate-EnsDBs.R inst/shinyHappyPeople/server.R inst/shinyHappyPeople/ui.R man/Deprecated.Rd man/EnsDb-AnnotationDbi.Rd man/EnsDb-class.Rd man/EnsDb-exonsBy.Rd man/EnsDb-lengths.Rd man/EnsDb-seqlevels.Rd man/EnsDb-sequences.Rd man/EnsDb-utils.Rd man/EnsDb.Rd man/Filter-classes.Rd man/ProteinFunctionality.Rd man/global-filters.Rd man/hasProteinData-EnsDb-method.Rd man/listEnsDbs.Rd man/makeEnsemblDbPackage.Rd man/runEnsDbApp.Rd man/useMySQL-EnsDb-method.Rd readme.md tests/testthat.R tests/testthat/test_Classes.R tests/testthat/test_Methods-Filter.R tests/testthat/test_Methods-with-returnFilterColumns.R tests/testthat/test_Methods.R tests/testthat/test_Protein-related-tests.R tests/testthat/test_SymbolFilter.R tests/testthat/test_dbhelpers.R tests/testthat/test_extractTranscriptSeqs.R tests/testthat/test_functions-EnsDb.R tests/testthat/test_functions-Filter.R tests/testthat/test_functions-create-EnsDb.R tests/testthat/test_functions-utils.R tests/testthat/test_select-methods.R tests/testthat/test_seqLevelStyle.R tests/testthat/test_validity.R vignettes/MySQL-backend.Rmd vignettes/ensembldb.Rmd vignettes/proteins.Rmd