Files in YTLogos/ensembldb
Utilities to create and use Ensembl-based annotation databases
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/Classes.R
R/Deprecated.R
R/Generics.R
R/Methods-Filter.R
R/Methods.R
R/dbhelpers.R
R/functions-EnsDb.R
R/functions-Filter.R
R/functions-create-EnsDb.R
R/functions-utils.R
R/select-methods.R
R/seqname-utils.R
R/zzz.R
inst/NEWS
inst/YGRanges.RData
inst/chrY/ens_chromosome.txt
inst/chrY/ens_exon.txt
inst/chrY/ens_gene.txt
inst/chrY/ens_metadata.txt
inst/chrY/ens_tx.txt
inst/chrY/ens_tx2exon.txt
inst/extended_tests/extended_tests.R
inst/extended_tests/performance_tests.R
inst/gff/Devosia_geojensis.ASM96941v1.32.gff3.gz
inst/gtf/Devosia_geojensis.ASM96941v1.32.gtf.gz
inst/perl/get_gene_transcript_exon_tables.pl
inst/perl/test_script.pl
inst/pkg-template/DESCRIPTION
inst/pkg-template/NAMESPACE
inst/pkg-template/R/zzz.R
inst/pkg-template/man/package.Rd
inst/scripts/checkEnsDbs.R
inst/scripts/generate-EnsDBs.R
inst/shinyHappyPeople/server.R
inst/shinyHappyPeople/ui.R
inst/txt/ENST00000200135.fa.gz
inst/txt/ENST00000335953.fa.gz
man/Deprecated.Rd
man/EnsDb-AnnotationDbi.Rd
man/EnsDb-class.Rd
man/EnsDb-exonsBy.Rd
man/EnsDb-lengths.Rd
man/EnsDb-seqlevels.Rd
man/EnsDb-sequences.Rd
man/EnsDb-utils.Rd
man/EnsDb.Rd
man/Filter-classes.Rd
man/ProteinFunctionality.Rd
man/global-filters.Rd
man/hasProteinData-EnsDb-method.Rd
man/listEnsDbs.Rd
man/makeEnsemblDbPackage.Rd
man/runEnsDbApp.Rd
man/useMySQL-EnsDb-method.Rd
readme.md
tests/testthat.R
tests/testthat/.Rhistory
tests/testthat/test_Classes.R
tests/testthat/test_Methods-Filter.R
tests/testthat/test_Methods-with-returnFilterColumns.R
tests/testthat/test_Methods.R
tests/testthat/test_Protein-related-tests.R
tests/testthat/test_SymbolFilter.R
tests/testthat/test_dbhelpers.R
tests/testthat/test_extractTranscriptSeqs.R
tests/testthat/test_functions-EnsDb.R
tests/testthat/test_functions-Filter.R
tests/testthat/test_functions-create-EnsDb.R
tests/testthat/test_functions-utils.R
tests/testthat/test_select-methods.R
tests/testthat/test_seqLevelStyle.R
tests/testthat/test_validity.R
vignettes/MySQL-backend.Rmd
vignettes/MySQL-backend.org
vignettes/ensembldb.Rmd
vignettes/ensembldb.org
vignettes/images/dblayout.png
vignettes/issues.org
vignettes/proteins.Rmd
vignettes/proteins.org
