Files in Yangshen0325/specmutual

Evolution of Mutualism Based on Speciation, Immigration and Extinction

R/cal_all_rates.R R/calc_sum_spec.R R/calculate_NQ.R R/create_island_mutual.R R/create_pars.R R/est_dist.R R/format_island_mutual_all.R R/format_island_mutual_pa.R R/get_plot_list.R R/get_simulation_outputs.R R/peregrine_sim.R R/plot_figures.R R/plot_stt.R R/robustness.R R/sample_event_time.R R/sim_condition_mutualism.R R/sim_core_mutualism.R R/sim_mutualism.R R/sim_test.R R/sim_test_dynamicsrates.R R/sim_test_totalrates.R R/update_rates_mutual.R R/update_states_mutual.R R/utility_funs.R README.md man/create_island_mutual.Rd man/create_mutual_pars.Rd man/est_dist.Rd man/get_simulation_outputs.Rd man/hello.Rd man/newMt_clado.Rd man/peregrine_sim.Rd man/plot_stt.Rd man/sample_event_mutual.Rd man/sample_time_mutual.Rd man/sim_condition_mutualism.Rd man/sim_core_mutualism.Rd man/sim_mutualism.Rd man/sim_test.Rd man/sim_test_dynamicsrates.Rd man/sim_test_totalrates.Rd man/update_rates_mutual.Rd man/update_states_mutual.Rd old_stuff/applicable_webs.R old_stuff/is_applicable.R script/job_H1_age10.R script/job_H2_age10.R script/job_K1.R script/job_age10.R script/job_estdist.R script/job_mu01.R script/job_mu02.R script/job_mu03.R script/job_par1.R script/job_par2.R script/job_par3.R script/job_par_combo.R script/job_par_combo1.R script/job_set1.R script/job_set2.R script/job_set3.R script/job_set4.R tests/testthat.R tests/testthat/test-ana_list.R tests/testthat/test-are_mutualism_pars.R tests/testthat/test-are_rates.R tests/testthat/test-are_same_rates.R tests/testthat/test-are_same_sample.R tests/testthat/test-are_same_stt.R tests/testthat/test-clado_list.R tests/testthat/test-cospec_rate.R tests/testthat/test-ext_list.R tests/testthat/test-gain_rate.R tests/testthat/test-immig_list.R tests/testthat/test-loss_rate.R tests/testthat/test-nk_list.R tests/testthat/test-pans_cmps.R trial/diff_stt.R trial/dynamics_NQ.R trial/outofmem.R trial/plots.R trial/q_one.R trial/q_one_rates.R trial/trial_sim.R