API for YosefLab/scone
Single Cell Overview of Normalized Expression data
| Global functions | |
|---|---|
| .build_linear_index | Source code |
| .likfn | Man page Source code |
| .parse_row | Man page Source code |
| .pzfn | Man page Source code |
| CLR_FN | Man page |
| DESEQ_FN | Man page Source code |
| FQT_FN | Man page Source code |
| FQ_FN | Man page Source code |
| PSINORM_FN | Man page Source code |
| PsiNorm | Man page |
| PsiNorm,ANY-method | Man page |
| PsiNorm,SingleCellExperiment-method | Man page |
| PsiNorm,SummarizedExperiment-method | Man page |
| SCRAN_FN | Man page Source code |
| SUM_FN | Man page |
| SconeExperiment | Man page |
| SconeExperiment,SummarizedExperiment-method | Man page |
| SconeExperiment,matrix-method | Man page |
| SconeExperiment-class | Man page |
| TMM_FN | Man page Source code |
| UQ_FN | Man page Source code |
| biplot_color | Man page Source code |
| biplot_interactive | Man page Source code |
| cellcycle_genes | Man page |
| computePsiNormSF | Source code |
| compute_transposed_PsiNorm_sf | Source code |
| control_genes | Man page |
| cortical_markers | Man page |
| estimate_ziber | Man page Source code |
| factor_sample_filter | Man page Source code |
| fast_estimate_ziber | Man page Source code |
| get_batch | Man page |
| get_batch,SconeExperiment-method | Man page |
| get_bio | Man page |
| get_bio,SconeExperiment-method | Man page |
| get_design | Man page |
| get_design,SconeExperiment,character-method | Man page |
| get_design,SconeExperiment,numeric-method | Man page |
| get_negconeval | Man page |
| get_negconeval,SconeExperiment-method | Man page |
| get_negconruv | Man page |
| get_negconruv,SconeExperiment-method | Man page |
| get_normalized | Man page |
| get_normalized,SconeExperiment,character-method | Man page |
| get_normalized,SconeExperiment,numeric-method | Man page |
| get_params | Man page |
| get_params,SconeExperiment-method | Man page |
| get_poscon | Man page |
| get_poscon,SconeExperiment-method | Man page |
| get_qc | Man page |
| get_qc,SconeExperiment-method | Man page |
| get_score_ranks | Man page |
| get_score_ranks,SconeExperiment-method | Man page |
| get_scores | Man page |
| get_scores,SconeExperiment-method | Man page |
| housekeeping | Man page |
| housekeeping_revised | Man page |
| impute_expectation | Man page Source code |
| impute_null | Man page Source code |
| lm_adjust | Man page Source code |
| make_design | Man page Source code |
| mat_v_div | Source code |
| mat_v_sub | Source code |
| metric_sample_filter | Man page Source code |
| scone | Man page |
| scone,SconeExperiment-method | Man page |
| sconeReport | Man page Source code |
| scone_easybake | Man page Source code |
| score_matrix | Man page Source code |
| select_methods | Man page |
| select_methods,SconeExperiment,character-method | Man page |
| select_methods,SconeExperiment,numeric-method | Man page |
| simple_FNR_params | Man page Source code |
