biplot_interactive: Interactive biplot

In YosefLab/scone: Single Cell Overview of Normalized Expression data

Interactive biplot

Description

This is a wrapper around biplot_color, creating a shiny gadget to allow the user to select specific points in the graph.

Usage

biplot_interactive(x, ...)

Arguments

x	a SconeExperiment object.
...	passed to biplot_color.

Details

Since this is based on the shiny gadget feature, it will not work in static documents, such as vignettes or markdown / knitr documents. See biplot_color for more details on the internals.

Value

A SconeExperiment object representing selected methods.

Examples

mat <- matrix(rpois(1000, lambda = 5), ncol=10)
colnames(mat) <- paste("X", 1:ncol(mat), sep="")
obj <- SconeExperiment(mat)
res <- scone(obj, scaling=list(none=identity,
   uq=UQ_FN, deseq=DESEQ_FN,  fq=FQT_FN),
evaluate=TRUE, k_ruv=0, k_qc=0, eval_kclust=2,
   bpparam = BiocParallel::SerialParam())
## Not run: 
biplot_interactive(res)

## End(Not run)

YosefLab/scone documentation built on Oct. 21, 2024, 4:39 p.m.