dot-parse_row: Parse rows

In YosefLab/scone: Single Cell Overview of Normalized Expression data

Parse rows

Description

This function is used internally in scone to parse the variables used to generate the design matrices.

Usage

.parse_row(pars, bio, batch, ruv_factors, qc)

Arguments

pars	character. A vector of parameters corresponding to a row of workflow parameters.
bio	factor. The biological covariate.
batch	factor. The batch covariate.
ruv_factors	list. A list containing the factors of unwanted variation (RUVg) for all upstream workflows.
qc	matrix. The principal components of the QC metric matrix.

Value

A list with the variables to be passed to make_design.

YosefLab/scone documentation built on Oct. 21, 2024, 4:39 p.m.