Files in YosefLab/scone
Single Cell Overview of Normalized Expression data
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/SCONE_DEFAULTS.R
R/biplot.R
R/biplot_interactive.R
R/data.R
R/get_design.R
R/get_normalized.R
R/helper.R
R/pareto_norm.R
R/sample_filtering.R
R/sconeReport.R
R/scone_eval.R
R/scone_main.R
R/scone_wrap.R
R/select_methods.R
R/ziber.R
README.md
data/cellcycle_genes.rda
data/cortical_markers.rda
data/housekeeping.rda
data/housekeeping_revised.rda
inst/NEWS
man/CLR_FN.Rd
man/DESEQ_FN.Rd
man/FQ_FN.Rd
man/PSINORM_FN.Rd
man/PsiNorm.Rd
man/SCRAN_FN.Rd
man/SUM_FN.Rd
man/SconeExperiment-class.Rd
man/TMM_FN.Rd
man/UQ_FN.Rd
man/biplot_color.Rd
man/biplot_interactive.Rd
man/control_genes.Rd
man/dot-likfn.Rd
man/dot-parse_row.Rd
man/dot-pzfn.Rd
man/estimate_ziber.Rd
man/factor_sample_filter.Rd
man/fast_estimate_ziber.Rd
man/get_bio.Rd
man/get_design.Rd
man/get_negconruv.Rd
man/get_normalized.Rd
man/get_params.Rd
man/get_qc.Rd
man/get_scores.Rd
man/impute_expectation.Rd
man/impute_null.Rd
man/lm_adjust.Rd
man/make_design.Rd
man/metric_sample_filter.Rd
man/scone.Rd
man/sconeReport.Rd
man/scone_easybake.Rd
man/score_matrix.Rd
man/select_methods.Rd
man/simple_FNR_params.Rd
scripts/ezbake.R
tests/testthat.R
tests/testthat/test-pareto_norm.R
tests/testthat/test_bpparam.R
tests/testthat/test_get_design.R
tests/testthat/test_get_norm.R
tests/testthat/test_hdf5.R
tests/testthat/test_norm.R
tests/testthat/test_s4.R
tests/testthat/test_scone.R
tests/testthat/test_select_methods.R
vignettes/PsiNorm.Rmd
vignettes/bibFile.bib
vignettes/sconeTutorial.Rmd
